Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 THEM7P-201ENST00000419556 672 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 SEPT14P12-201ENST00000442280 560 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC010240.2-201ENST00000445363 1205 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 FTLP8-201ENST00000446770 267 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 PPIAP7-201ENST00000454070 489 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 HMGB3P14-201ENST00000494195 599 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 RNA5SP441-201ENST00000516809 88 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AP000620.1-201ENST00000527147 504 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 NPIPB14P-203ENST00000532298 987 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC011500.1-201ENST00000601963 469 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC111152.1-202ENST00000635848 339 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC027575.3-201ENST00000583058 2747 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 AC092070.2-203ENST00000598377 3644 ntBASIC6.48□□□□□ -1.37
SIX2Q9NPC8 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 NMD3P2-201ENST00000421815 761 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC130360.1-201ENST00000425489 1117 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC073410.1-201ENST00000435125 589 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 RPS12P17-201ENST00000438591 377 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 RN7SL568P-201ENST00000493069 298 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 RN7SL362P-201ENST00000494228 267 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 RN7SKP288-201ENST00000516227 268 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC130365.2-201ENST00000525882 1201 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 AC068768.2-201ENST00000602352 343 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 uc_338.31-201ENST00000615595 186 ntBASIC6.47□□□□□ -1.37
SIX2Q9NPC8 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SIX2Q9NPC8 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 AP000547.3-204ENST00000588548 2523 ntBASIC6.46□□□□□ -1.37
SIX2Q9NPC8 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
SIX2Q9NPC8 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 RN7SKP250-201ENST00000363924 321 ntBASIC6.46□□□□□ -1.38
SIX2Q9NPC8 RNA5SP211-201ENST00000365516 117 ntBASIC6.46□□□□□ -1.38
SIX2Q9NPC8 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 RPL35AP3-201ENST00000414680 288 ntBASIC6.46□□□□□ -1.38
SIX2Q9NPC8 AC108479.1-201ENST00000431142 427 ntBASIC6.46□□□□□ -1.38
SIX2Q9NPC8 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 AC005017.1-201ENST00000482002 490 ntBASIC6.46□□□□□ -1.38
SIX2Q9NPC8 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.46□□□□□ -1.38
SIX2Q9NPC8 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms