Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC007342.7-201ENST00000624610 2337 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AP002800.1-201ENST00000624982 2225 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC092111.2-201ENST00000611627 1414 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 NEPNP-201ENST00000404786 1371 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MIR187-201ENST00000385062 109 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ATF1P1-201ENST00000406040 927 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL773545.3-201ENST00000414297 706 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC009244.1-201ENST00000450566 258 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 Z95152.1-201ENST00000453556 656 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 CST12P-201ENST00000457644 362 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 RPS4XP23-201ENST00000487801 237 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 RNA5SP96-201ENST00000516041 107 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MTATP6P15-201ENST00000527233 835 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 LRRC6P1-201ENST00000532188 885 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC007537.1-201ENST00000539347 327 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL049830.4-201ENST00000555149 351 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ZNF971P-201ENST00000562068 1249 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL365223.1-201ENST00000574864 1297 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MIR5010-201ENST00000582846 120 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 VN1R87P-201ENST00000596706 487 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC007255.2-201ENST00000604053 631 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC067838.1-201ENST00000606064 577 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC025171.4-201ENST00000607250 1047 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AL035461.2-201ENST00000619201 524 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC011330.2-201ENST00000621680 635 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC025262.3-201ENST00000623666 360 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 CASC19-274ENST00000642018 970 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC008691.1-209ENST00000642094 814 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 AC132219.2-201ENST00000624416 2327 ntBASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.88□□□□□ -1.31
TRIM39Q9HCM9 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.87□□□□□ -1.31
TRIM39Q9HCM9 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms