Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 RN7SKP86-201ENST00000410454 332 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 RNU2-18P-201ENST00000411224 162 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 VN1R38P-201ENST00000450265 887 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 WBP1LP12-201ENST00000604449 331 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL591926.1-201ENST00000620542 217 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL122023.1-201ENST00000622847 530 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 SAGE3P-201ENST00000619800 1635 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AL031651.1-201ENST00000615357 1438 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC073365.1-203ENST00000641055 1992 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC093297.3-201ENST00000607056 2517 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC013488.1-201ENST00000526618 1838 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-1320P-201ENST00000390838 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-1269P-201ENST00000391139 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 YWHAZP4-201ENST00000392459 708 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RPL7AP14-201ENST00000424041 802 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 IGLV3-4-201ENST00000432300 244 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AL392003.1-201ENST00000434394 243 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC097359.1-201ENST00000447946 463 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC093166.3-201ENST00000448785 303 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 PPIA-203ENST00000451562 544 ntTSL 2 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-599P-201ENST00000459383 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-1193P-201ENST00000459461 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC010343.2-201ENST00000510162 224 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC073581.1-201ENST00000519036 575 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 IGHV7-34-1-201ENST00000519200 350 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC084337.1-201ENST00000524809 686 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AL049874.4-201ENST00000557593 255 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AL451049.1-201ENST00000608672 497 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AL159169.2-201ENST00000610061 1269 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-368P-201ENST00000620928 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 RNU6-538P-201ENST00000622329 107 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 FGG-201ENST00000336098 1659 ntTSL 2 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 AC003985.2-201ENST00000562268 1669 ntBASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4AQ9BY43 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC007114.2-201ENST00000576014 4281 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC002127.1-201ENST00000421305 225 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AL355994.1-201ENST00000424379 260 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AL157884.1-201ENST00000424561 454 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC010086.1-201ENST00000437359 1052 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ARMC4P1-201ENST00000438905 707 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 HMGN1P8-201ENST00000463578 288 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 HMGN1P16-201ENST00000508308 283 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 RNA5SP418-201ENST00000515951 117 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 IGHV1-14-201ENST00000523391 241 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AP000662.1-201ENST00000530952 487 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC027026.1-201ENST00000532323 742 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms