Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC42Q96M95 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC42Q96M95 OR2L9P-201ENST00000444456 913 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AL133351.3-201ENST00000454998 193 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 OSTCP1-201ENST00000455507 450 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC036176.3-201ENST00000602456 418 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC009237.12-201ENST00000604755 742 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC42Q96M95 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC42Q96M95 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC42Q96M95 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC42Q96M95 AC092070.2-203ENST00000598377 3644 ntBASIC6.54□□□□□ -1.36
CCDC42Q96M95 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC027575.3-201ENST00000583058 2747 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 RNA5SP485-201ENST00000365053 119 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 KRT8P51-201ENST00000438938 274 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 HMGN1P32-201ENST00000441744 256 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 HIGD1AP16-201ENST00000450986 258 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 RNA5SP206-201ENST00000516703 121 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 CYCSP25-201ENST00000525280 316 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC037479.1-201ENST00000558361 625 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 Z93930.3-201ENST00000607919 749 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 MIR6503-201ENST00000622884 86 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AC000095.2-202ENST00000637415 154 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 AL137141.1-201ENST00000624622 4836 ntBASIC6.53□□□□□ -1.36
CCDC42Q96M95 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC42Q96M95 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC42Q96M95 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
CCDC42Q96M95 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC005224.3-201ENST00000584683 2140 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 CASC19-246ENST00000641625 1606 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 RNA5SP85-201ENST00000365378 119 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AL157702.1-201ENST00000398764 426 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 VIM2P-201ENST00000402383 1294 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 MIR1266-201ENST00000408125 84 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 UBTFL2-201ENST00000411859 1191 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 OSTCP4-201ENST00000424397 449 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC092646.1-201ENST00000427142 901 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 RPL31P11-202ENST00000454082 372 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 ACA64.4-201ENST00000459070 127 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC135983.3-201ENST00000528049 1226 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms