Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS39Q96JC1 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS39Q96JC1 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS39Q96JC1 AL121768.1-201ENST00000613917 2544 ntBASIC6.24□□□□□ -1.41
VPS39Q96JC1 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS39Q96JC1 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS39Q96JC1 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 RNU1-59P-201ENST00000364829 162 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 MIR1266-201ENST00000408125 84 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 RN7SKP151-201ENST00000410230 316 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 RPL31P11-202ENST00000454082 372 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC112187.1-201ENST00000455837 479 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 RN7SL790P-201ENST00000474043 298 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 RN7SL369P-201ENST00000477138 299 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 RPS7P11-201ENST00000484240 586 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 RNA5SP418-201ENST00000515951 117 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 AP003080.1-202ENST00000526526 915 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC023310.2-201ENST00000553844 547 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC027334.1-201ENST00000603257 310 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 U1.25-201ENST00000614085 162 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 U1.34-201ENST00000618578 162 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 U1.31-201ENST00000620022 160 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 MIR6503-201ENST00000622884 86 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 CLUHP10-201ENST00000631979 980 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 OR7E91P-202ENST00000642062 1198 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 AC093909.5-201ENST00000621839 1799 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
VPS39Q96JC1 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 NAMPTP1-201ENST00000440465 2514 ntBASIC6.23□□□□□ -1.41
VPS39Q96JC1 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.23□□□□□ -1.41
VPS39Q96JC1 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL121835.1-201ENST00000404250 354 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 SNORA81-201ENST00000408493 178 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC016027.5-201ENST00000427227 210 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 EMC3-AS1-205ENST00000438698 534 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL445687.2-201ENST00000458156 728 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC063955.1-201ENST00000462872 685 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 RPS4XP17-201ENST00000479057 754 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL035690.1-201ENST00000490892 383 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 EIF4E2P2-201ENST00000492033 736 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 RN7SKP67-201ENST00000515905 235 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 DYNLL1P1-201ENST00000595442 269 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
VPS39Q96JC1 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms