Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 GUCY1B2-204ENST00000531898 1979 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TANK-205ENST00000405852 2155 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RN7SKP160-201ENST00000363804 340 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RNA5SP485-201ENST00000365053 119 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RPL23AP64-201ENST00000469465 435 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC055733.3-201ENST00000505214 523 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TMEM97P2-201ENST00000517841 403 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL356986.1-201ENST00000604085 341 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC009120.2-204ENST00000621548 2032 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC022905.1-201ENST00000503430 3048 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RNA5SP273-201ENST00000362484 113 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC002486.2-201ENST00000447806 590 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL034399.1-201ENST00000451535 380 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 RN7SL561P-201ENST00000488553 281 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC139272.1-201ENST00000505516 640 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC131392.1-201ENST00000506490 633 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 GTF2IP6-201ENST00000583143 541 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC008536.1-201ENST00000602872 669 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC004948.1-201ENST00000609858 672 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 MAPK10-323ENST00000641493 3207 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ST7-203ENST00000393443 2360 ntTSL 2 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC1.91□□□□□ -2.1
SYNE1Q8NF91 TMEM75-201ENST00000624314 2165 ntBASIC1.91□□□□□ -2.1
SYNE1Q8NF91 AC023490.2-201ENST00000359859 470 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 ELOCP3-201ENST00000439303 348 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC073916.1-201ENST00000545095 130 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC067773.1-201ENST00000603284 1094 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC068802.1-201ENST00000603420 732 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 CCL14-204ENST00000622526 472 ntTSL 3 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC120057.5-201ENST00000623840 154 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 RARSP1-201ENST00000542842 1418 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC062029.1-202ENST00000606164 3651 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 AC235565.1-201ENST00000456962 1325 ntBASIC1.9□□□□□ -2.1
SYNE1Q8NF91 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 NRIR-201ENST00000366140 799 ntTSL 3 BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.1
SYNE1Q8NF91 RANP6-201ENST00000413691 644 ntBASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms