Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
FOXA1P55317 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
FOXA1P55317 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
FOXA1P55317 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
FOXA1P55317 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
FOXA1P55317 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.83□□□□□ -1.48
FOXA1P55317 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.83□□□□□ -1.48
FOXA1P55317 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
FOXA1P55317 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 OR10R3P-201ENST00000361688 942 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
FOXA1P55317 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 GAPDHP19-201ENST00000431768 1005 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 PSMD10P2-201ENST00000432890 672 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
FOXA1P55317 OR3D1P-201ENST00000438288 955 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 AC245291.3-201ENST00000443400 292 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 RN7SL393P-201ENST00000463588 296 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 RPS4XP17-201ENST00000479057 754 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 ZNF519P4-201ENST00000514008 125 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 AP005136.2-201ENST00000583253 1049 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 SMIM12P1-201ENST00000603004 274 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.83□□□□□ -1.48
FOXA1P55317 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.83□□□□□ -1.48
FOXA1P55317 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 AC138907.8-201ENST00000623981 2256 ntBASIC5.83□□□□□ -1.48
FOXA1P55317 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
FOXA1P55317 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
FOXA1P55317 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.83□□□□□ -1.48
FOXA1P55317 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
FOXA1P55317 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.82□□□□□ -1.48
FOXA1P55317 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 AP000641.1-201ENST00000531988 1639 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 RN7SKP144-201ENST00000411108 279 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 RN7SKP108-201ENST00000411367 328 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL645936.1-201ENST00000441979 518 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.82□□□□□ -1.48
FOXA1P55317 H3F3AP5-201ENST00000475267 429 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 RN7SL836P-201ENST00000476140 296 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 AC018639.1-201ENST00000492994 442 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.82□□□□□ -1.48
FOXA1P55317 HMGN1P16-201ENST00000508308 283 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 AC138517.1-201ENST00000515724 568 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 SNORA74.1-201ENST00000516320 180 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.82□□□□□ -1.48
FOXA1P55317 AL355974.3-201ENST00000617383 467 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 MIR6823-201ENST00000622118 61 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 SNX18P12-201ENST00000624821 759 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.82□□□□□ -1.48
FOXA1P55317 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms