Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC087575.1-201ENST00000585087 229 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AC036176.3-201ENST00000602456 418 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AC005479.3-201ENST00000602790 431 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.31□□□□□ -1.56
CDX1P47902 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CDX1P47902 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 AP005435.3-201ENST00000531260 3198 ntBASIC5.3□□□□□ -1.56
CDX1P47902 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 AC092451.3-201ENST00000625067 1343 ntBASIC5.3□□□□□ -1.56
CDX1P47902 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 OR5T3-201ENST00000303059 1023 ntBASIC5.3□□□□□ -1.56
CDX1P47902 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CDX1P47902 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CDX1P47902 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CDX1P47902 OR13C3-201ENST00000374781 1108 ntBASIC5.3□□□□□ -1.56
CDX1P47902 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 AL672167.2-201ENST00000377164 879 ntBASIC5.3□□□□□ -1.56
CDX1P47902 SNORD94-201ENST00000386037 137 ntBASIC5.3□□□□□ -1.56
CDX1P47902 RNA5SP474-201ENST00000391234 90 ntBASIC5.3□□□□□ -1.56
CDX1P47902 UBBP1-201ENST00000392399 473 ntBASIC5.3□□□□□ -1.56
CDX1P47902 CXADRP1-201ENST00000398098 1095 ntBASIC5.3□□□□□ -1.56
CDX1P47902 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 AL353133.1-201ENST00000407695 401 ntBASIC5.3□□□□□ -1.56
CDX1P47902 RN7SKP188-201ENST00000410789 317 ntBASIC5.3□□□□□ -1.56
CDX1P47902 RN7SKP205-201ENST00000410999 307 ntBASIC5.3□□□□□ -1.56
CDX1P47902 TMA16P2-201ENST00000413187 601 ntBASIC5.3□□□□□ -1.56
CDX1P47902 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC5.3□□□□□ -1.56
CDX1P47902 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 NPM1P26-201ENST00000426339 738 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 SNRPBP1-201ENST00000443634 282 ntBASIC5.3□□□□□ -1.56
CDX1P47902 GAPDHP20-201ENST00000444107 1007 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 Z83838.1-202ENST00000456225 839 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AC098583.1-201ENST00000480875 255 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AC012123.2-201ENST00000485809 248 ntBASIC5.3□□□□□ -1.56
CDX1P47902 SNRPCP11-201ENST00000492453 205 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AC009567.2-201ENST00000502989 349 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AK4P6-201ENST00000505168 528 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC5.3□□□□□ -1.56
CDX1P47902 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 ARGFXP2-201ENST00000579304 949 ntBASIC5.3□□□□□ -1.56
CDX1P47902 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 AP001267.4-201ENST00000602598 545 ntBASIC5.3□□□□□ -1.56
CDX1P47902 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.3□□□□□ -1.56
CDX1P47902 AC002069.2-201ENST00000603580 883 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AL159169.2-201ENST00000610061 1269 ntBASIC5.3□□□□□ -1.56
CDX1P47902 AL445649.1-201ENST00000615941 691 ntBASIC5.3□□□□□ -1.56
CDX1P47902 CXADRP3-202ENST00000617265 1100 ntBASIC5.3□□□□□ -1.56
CDX1P47902 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 AC120057.5-201ENST00000623840 154 ntBASIC5.3□□□□□ -1.56
CDX1P47902 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.3□□□□□ -1.56
CDX1P47902 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CDX1P47902 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.3□□□□□ -1.56
CDX1P47902 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.3□□□□□ -1.56
CDX1P47902 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CDX1P47902 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms