Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL445649.1-201ENST00000615941 691 ntBASIC6.41□□□□□ -1.38
MSX2P35548 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 PPP3CB-AS1-214ENST00000620432 654 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 AC009501.3-201ENST00000605001 1352 ntBASIC6.41□□□□□ -1.38
MSX2P35548 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 AC005332.9-201ENST00000620266 2921 ntBASIC6.4□□□□□ -1.38
MSX2P35548 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
MSX2P35548 AC009237.9-201ENST00000414800 347 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AL031779.1-201ENST00000415663 330 ntBASIC6.4□□□□□ -1.38
MSX2P35548 RPSAP59-201ENST00000421048 890 ntBASIC6.4□□□□□ -1.38
MSX2P35548 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 PTP4A1P7-201ENST00000423476 514 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC010099.3-201ENST00000423896 409 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX2P35548 CHCHD3P1-201ENST00000425516 676 ntBASIC6.4□□□□□ -1.38
MSX2P35548 KCTD10P1-201ENST00000434203 625 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 MTCYBP12-201ENST00000440559 1134 ntBASIC6.4□□□□□ -1.38
MSX2P35548 SNRPFP2-201ENST00000440710 251 ntBASIC6.4□□□□□ -1.38
MSX2P35548 MTCO1P53-201ENST00000441633 699 ntBASIC6.4□□□□□ -1.38
MSX2P35548 RPL6P24-201ENST00000445338 864 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 AC092824.1-201ENST00000483524 576 ntBASIC6.4□□□□□ -1.38
MSX2P35548 RNU6-889P-201ENST00000517189 103 ntBASIC6.4□□□□□ -1.38
MSX2P35548 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC6.4□□□□□ -1.38
MSX2P35548 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC6.4□□□□□ -1.38
MSX2P35548 OXR1-212ENST00000521592 993 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 IGLVV-66-201ENST00000523818 341 ntBASIC6.4□□□□□ -1.38
MSX2P35548 IGLV3-6-201ENST00000523937 250 ntBASIC6.4□□□□□ -1.38
MSX2P35548 ZNF726-203ENST00000525354 806 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 C11orf70-205ENST00000534360 520 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 AL109628.1-201ENST00000556877 366 ntBASIC6.4□□□□□ -1.38
MSX2P35548 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 AC020914.7-201ENST00000594477 545 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSX2P35548 AL133247.2-201ENST00000603236 482 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC026741.1-201ENST00000605892 482 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC087752.4-201ENST00000605911 462 ntBASIC6.4□□□□□ -1.38
MSX2P35548 RN7SL778P-201ENST00000607160 297 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 AC011939.3-201ENST00000613686 466 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AL645927.2-201ENST00000618350 349 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC087072.2-201ENST00000621060 682 ntBASIC6.4□□□□□ -1.38
MSX2P35548 AC007204.1-201ENST00000621794 555 ntBASIC6.4□□□□□ -1.38
MSX2P35548 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 AC016542.3-201ENST00000623520 619 ntBASIC6.4□□□□□ -1.38
MSX2P35548 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.4□□□□□ -1.38
MSX2P35548 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX2P35548 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
MSX2P35548 AL929601.4-201ENST00000613011 1341 ntBASIC6.4□□□□□ -1.39
MSX2P35548 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.4□□□□□ -1.39
MSX2P35548 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSX2P35548 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.4□□□□□ -1.39
MSX2P35548 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.4□□□□□ -1.39
MSX2P35548 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC6.4□□□□□ -1.39
MSX2P35548 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
MSX2P35548 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
MSX2P35548 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
MSX2P35548 RNU1-21P-201ENST00000363327 163 ntBASIC6.39□□□□□ -1.39
MSX2P35548 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 SNORD116-1-201ENST00000384335 95 ntBASIC6.39□□□□□ -1.39
MSX2P35548 RNA5SP115-201ENST00000411160 107 ntBASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms