Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 AC092692.1-201ENST00000623625 2595 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A1P20908 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 RNU105B-201ENST00000364478 208 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL5A1P20908 AP000534.2-201ENST00000412729 568 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 AC092017.2-201ENST00000427600 362 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 ELOCP3-201ENST00000439303 348 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 AL163193.1-201ENST00000444895 788 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 RN7SL269P-201ENST00000467795 305 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 AC114728.1-201ENST00000488289 483 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 IGKV2-18-201ENST00000522607 343 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 WBP1LP3-201ENST00000523033 208 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 HMGN2P36-201ENST00000529541 409 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 AC092865.1-201ENST00000544395 1023 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 AC022404.1-201ENST00000555320 273 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 AC044860.2-201ENST00000561005 179 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.86□□□□□ -1.47
COL5A1P20908 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A1P20908 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 AL021368.3-201ENST00000607119 578 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 CASC19-222ENST00000641321 1173 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 OFD1P17-201ENST00000437639 3018 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 WDR95P-201ENST00000425638 1542 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 AC119674.1-202ENST00000641333 1860 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL5A1P20908 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 TMEM75-201ENST00000624314 2165 ntBASIC5.86□□□□□ -1.47
COL5A1P20908 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A1P20908 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A1P20908 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 OR2AT2P-201ENST00000413438 905 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 CT45A11P-201ENST00000448043 1134 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A1P20908 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A1P20908 EIF4A2P5-201ENST00000529914 499 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.85□□□□□ -1.47
COL5A1P20908 OR10G5P-201ENST00000532733 358 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.85□□□□□ -1.47
COL5A1P20908 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A1P20908 AC015802.2-201ENST00000589690 189 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 AC116651.1-201ENST00000609724 556 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A1P20908 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.85□□□□□ -1.47
COL5A1P20908 OR7A1P-202ENST00000641542 1158 ntBASIC5.85□□□□□ -1.47
COL5A1P20908 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A1P20908 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A1P20908 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A1P20908 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms