Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MRPS6P2-201ENST00000381143 370 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 SOD1P1-201ENST00000407803 440 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 GNG5P5-201ENST00000420444 220 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AL390866.1-201ENST00000425137 469 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 MGAT2P2-201ENST00000427194 797 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 RPL22P11-201ENST00000434894 385 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 RN7SL91P-201ENST00000469313 291 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 RN7SL223P-201ENST00000470401 294 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 PDPN-205ENST00000487038 607 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 RPL19P11-201ENST00000495944 589 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC010442.1-201ENST00000515583 816 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 OR5D2P-201ENST00000524390 911 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC069240.2-201ENST00000550242 609 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 MIR4428-201ENST00000584884 73 ntBASIC4.68□□□□□ -1.66
CXCL1P09341 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
CXCL1P09341 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CXCL1P09341 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.68□□□□□ -1.66
CXCL1P09341 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.68□□□□□ -1.66
CXCL1P09341 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 AC092701.1-201ENST00000623627 1551 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 ING3-204ENST00000431467 1447 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CXCL1P09341 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 C14orf177-201ENST00000325812 1284 ntAPPRIS P2 TSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 SNORD16-201ENST00000362803 99 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 RPS12P20-201ENST00000464109 380 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AC025271.1-201ENST00000485045 429 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 RPL24-206ENST00000495401 478 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 Z99943.2-201ENST00000507585 266 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC010343.2-201ENST00000510162 224 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
CXCL1P09341 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC021242.2-202ENST00000522129 545 ntTSL 4 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC107952.1-201ENST00000524200 376 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.67□□□□□ -1.66
CXCL1P09341 MIR4262-201ENST00000578394 54 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AC023389.2-201ENST00000580031 955 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC4.67□□□□□ -1.66
CXCL1P09341 AC061999.1-201ENST00000624454 177 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 AC005005.4-201ENST00000623789 16698 ntBASIC4.67□□□□□ -1.66
CXCL1P09341 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CXCL1P09341 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms