Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
TM9SF3Q9HD45 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
TM9SF3Q9HD45 AC007159.1-201ENST00000566529 4706 ntBASIC6.38□□□□□ -1.39
TM9SF3Q9HD45 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
TM9SF3Q9HD45 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL353743.3-201ENST00000442109 1468 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC093225.1-201ENST00000506867 1408 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 RNA5SP514-201ENST00000363717 111 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 LCN1P2-201ENST00000372030 223 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 Z68868.1-201ENST00000429048 544 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL590399.4-201ENST00000436561 601 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC022415.1-202ENST00000486612 523 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 RPL17P2-201ENST00000491913 451 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 RN7SL104P-201ENST00000498686 293 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 SNORA58-201ENST00000505219 137 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 OR7E99P-201ENST00000505750 922 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AP003080.1-202ENST00000526526 915 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 KCTD9P4-201ENST00000526766 1166 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 CYCSP38-201ENST00000559840 322 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 MRPS21P8-201ENST00000569196 235 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 MIR4701-201ENST00000583094 63 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC011497.2-201ENST00000600255 639 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL080312.2-201ENST00000613001 630 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL096712.1-201ENST00000614561 159 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 MIR6729-201ENST00000618194 65 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC021422.1-201ENST00000621212 473 ntBASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
TM9SF3Q9HD45 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 CDY11P-201ENST00000447168 1651 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 OR2W4P-201ENST00000406496 926 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC112492.2-201ENST00000432774 1030 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC003989.1-201ENST00000434569 565 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RPL6P30-201ENST00000443382 862 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC097463.1-201ENST00000447288 481 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AL139156.3-201ENST00000454802 394 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RN7SL643P-201ENST00000471845 291 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RPL23AP68-201ENST00000480924 445 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC095052.1-201ENST00000509955 863 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 NPM1P21-201ENST00000513394 762 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RN7SKP248-201ENST00000516278 305 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 IGLVIV-64-201ENST00000518581 301 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 COX6B1P4-201ENST00000519826 484 ntBASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TM9SF3Q9HD45 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms