Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 HMGN1P32-201ENST00000441744 256 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 RAB28P3-201ENST00000448325 597 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AL445991.1-201ENST00000450381 475 ntBASIC5.32□□□□□ -1.56
CDX1P47902 MTND6P32-201ENST00000457611 483 ntBASIC5.32□□□□□ -1.56
CDX1P47902 RN7SL216P-201ENST00000471607 298 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AP003385.3-201ENST00000472498 287 ntBASIC5.32□□□□□ -1.56
CDX1P47902 MARK2P8-201ENST00000476069 952 ntBASIC5.32□□□□□ -1.56
CDX1P47902 RN7SL502P-201ENST00000481857 290 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC096743.1-201ENST00000485172 319 ntBASIC5.32□□□□□ -1.56
CDX1P47902 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 RPL5P33-201ENST00000487833 905 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC5.32□□□□□ -1.56
CDX1P47902 AC021146.11-201ENST00000503319 491 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC114324.2-202ENST00000503812 134 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC5.32□□□□□ -1.56
CDX1P47902 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 AC026616.1-201ENST00000523157 525 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CDX1P47902 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.32□□□□□ -1.56
CDX1P47902 AC239803.2-201ENST00000610161 430 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.32□□□□□ -1.56
CDX1P47902 AL118556.2-201ENST00000614375 824 ntBASIC5.32□□□□□ -1.56
CDX1P47902 RNA5SP439-201ENST00000617595 124 ntBASIC5.32□□□□□ -1.56
CDX1P47902 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 AC025287.2-201ENST00000621911 668 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC127071.2-201ENST00000623293 527 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC020763.5-201ENST00000623298 430 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AL118508.4-201ENST00000624142 1176 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AC005858.3-201ENST00000624756 589 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC5.32□□□□□ -1.56
CDX1P47902 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CDX1P47902 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 AC010401.2-201ENST00000575137 4934 ntBASIC5.32□□□□□ -1.56
CDX1P47902 AP000473.2-201ENST00000602659 1537 ntBASIC5.32□□□□□ -1.56
CDX1P47902 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 AC125336.1-201ENST00000508893 2827 ntBASIC5.32□□□□□ -1.56
CDX1P47902 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CDX1P47902 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CDX1P47902 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CDX1P47902 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 AC003985.2-201ENST00000562268 1669 ntBASIC5.31□□□□□ -1.56
CDX1P47902 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 AC019178.1-201ENST00000392337 440 ntBASIC5.31□□□□□ -1.56
CDX1P47902 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 RNA5SP115-201ENST00000411160 107 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 SPATA20P1-201ENST00000423089 438 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 AL589794.1-201ENST00000424971 390 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 GAPDHP75-201ENST00000433910 943 ntBASIC5.31□□□□□ -1.56
CDX1P47902 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CDX1P47902 AC114878.1-201ENST00000441166 358 ntBASIC5.31□□□□□ -1.56
CDX1P47902 E2F6P3-201ENST00000441743 743 ntBASIC5.31□□□□□ -1.56
CDX1P47902 RPL5P10-201ENST00000445207 894 ntBASIC5.31□□□□□ -1.56
CDX1P47902 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC5.31□□□□□ -1.56
CDX1P47902 AC239798.3-201ENST00000454459 408 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.31□□□□□ -1.56
CDX1P47902 AC135721.2-201ENST00000464237 300 ntBASIC5.31□□□□□ -1.56
CDX1P47902 SLC25A51P1-201ENST00000468432 871 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 NREP-217ENST00000509025 987 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.31□□□□□ -1.56
CDX1P47902 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.31□□□□□ -1.56
CDX1P47902 AC104997.1-201ENST00000519761 717 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AC009879.1-201ENST00000520029 839 ntBASIC5.31□□□□□ -1.56
CDX1P47902 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.31□□□□□ -1.56
CDX1P47902 AC084851.2-201ENST00000530377 364 ntBASIC5.31□□□□□ -1.56
CDX1P47902 OR4A21P-201ENST00000532759 944 ntBASIC5.31□□□□□ -1.56
CDX1P47902 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.31□□□□□ -1.56
CDX1P47902 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms