Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 TMA16P2-201ENST00000413187 601 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.55□□□□□ -1.36
PTPN9P43378 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 AC094019.1-201ENST00000434678 472 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 LINC00328-2P-201ENST00000436585 219 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.55□□□□□ -1.36
PTPN9P43378 CXCR2P1-202ENST00000443392 1074 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.55□□□□□ -1.36
PTPN9P43378 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.55□□□□□ -1.36
PTPN9P43378 RN7SL104P-201ENST00000498686 293 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 RNA5SP206-201ENST00000516703 121 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 RNA5SP400-201ENST00000517155 111 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 OR4A40P-201ENST00000533878 948 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.55□□□□□ -1.36
PTPN9P43378 AC067805.1-201ENST00000559344 470 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 OR4H6P-201ENST00000563771 921 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 MT1CP-201ENST00000567054 174 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 AP000919.1-201ENST00000582850 985 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 AL137246.2-201ENST00000613439 662 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 AL353684.1-201ENST00000622677 1120 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 AL118508.4-201ENST00000624142 1176 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 MTCO1P1-201ENST00000624263 1081 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.55□□□□□ -1.36
PTPN9P43378 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
PTPN9P43378 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
PTPN9P43378 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.55□□□□□ -1.36
PTPN9P43378 AL355377.1-201ENST00000621125 1653 ntBASIC6.55□□□□□ -1.36
PTPN9P43378 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PTPN9P43378 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
PTPN9P43378 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 MIR191-201ENST00000384873 92 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 RPL7P58-201ENST00000402913 758 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 RNU4-64P-201ENST00000410795 131 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 HMGA1P8-201ENST00000414130 321 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 LDHAP2-201ENST00000437325 985 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC016908.1-201ENST00000442571 1219 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 AOX3P-204ENST00000491025 2107 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 HMGN1P16-201ENST00000508308 283 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 SUMO2P19-201ENST00000518920 295 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 AP001000.1-201ENST00000526843 742 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AP001858.2-201ENST00000536213 601 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.54□□□□□ -1.36
PTPN9P43378 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.54□□□□□ -1.36
PTPN9P43378 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC091167.5-201ENST00000605689 894 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC239803.2-201ENST00000610161 430 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC012676.3-201ENST00000614983 479 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AP003400.6-201ENST00000624698 740 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 AC010325.3-201ENST00000641084 394 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.54□□□□□ -1.36
PTPN9P43378 NCOA4P2-201ENST00000340589 1813 ntBASIC6.54□□□□□ -1.36
PTPN9P43378 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms