Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC7.32□□□□□ -1.24
SMARCA1P28370 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.32□□□□□ -1.24
SMARCA1P28370 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC7.32□□□□□ -1.24
SMARCA1P28370 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 MIR188-201ENST00000385034 86 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.32□□□□□ -1.24
SMARCA1P28370 AC013268.2-201ENST00000420753 337 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 PPIA-203ENST00000451562 544 ntTSL 2 BASIC7.32□□□□□ -1.24
SMARCA1P28370 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC7.32□□□□□ -1.24
SMARCA1P28370 RARRES2P3-201ENST00000457739 473 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 RNU7-157P-201ENST00000459600 66 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 HMGN1P8-201ENST00000463578 288 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC7.32□□□□□ -1.24
SMARCA1P28370 AC112206.4-201ENST00000515142 405 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 RN7SKP5-201ENST00000517045 272 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC7.32□□□□□ -1.24
SMARCA1P28370 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC7.32□□□□□ -1.24
SMARCA1P28370 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
SMARCA1P28370 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC7.32□□□□□ -1.24
SMARCA1P28370 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC7.32□□□□□ -1.24
SMARCA1P28370 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC7.32□□□□□ -1.24
SMARCA1P28370 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 AL078601.3-201ENST00000573303 535 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC020978.7-201ENST00000575953 1187 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 SMIM12P1-201ENST00000603004 274 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC091193.1-201ENST00000604640 448 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC016542.1-201ENST00000608259 493 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AC024255.1-201ENST00000614376 102 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 AL591926.1-201ENST00000620542 217 ntBASIC7.32□□□□□ -1.24
SMARCA1P28370 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC7.32□□□□□ -1.24
SMARCA1P28370 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.32□□□□□ -1.24
SMARCA1P28370 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SMARCA1P28370 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.31□□□□□ -1.24
SMARCA1P28370 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 TOPORSLP1-201ENST00000467693 2102 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 BX284613.1-201ENST00000452221 1641 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 Y_RNA.110-201ENST00000363220 99 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 RN7SKP171-201ENST00000364417 303 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 RN7SKP121-201ENST00000410842 305 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 HSFY1P1-201ENST00000423928 1178 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 RPS7P14-201ENST00000426405 583 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 MTND4P15-201ENST00000437913 1033 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 RNF19BPY-201ENST00000458209 1550 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 SEPT7P6-201ENST00000469999 1143 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 AC095052.1-201ENST00000509955 863 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 ZNF519P4-201ENST00000514008 125 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 RNA5SP206-201ENST00000516703 121 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC7.31□□□□□ -1.24
SMARCA1P28370 AL049874.4-201ENST00000557593 255 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AC009268.1-201ENST00000561352 1203 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AC018558.5-201ENST00000565840 952 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC7.31□□□□□ -1.24
SMARCA1P28370 AC067852.5-201ENST00000589299 310 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 AL135999.3-201ENST00000610501 812 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 uc_338.31-201ENST00000615595 186 ntBASIC7.31□□□□□ -1.24
SMARCA1P28370 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC7.31□□□□□ -1.24
SMARCA1P28370 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.31□□□□□ -1.24
SMARCA1P28370 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.31□□□□□ -1.24
SMARCA1P28370 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC7.31□□□□□ -1.24
SMARCA1P28370 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMARCA1P28370 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.3□□□□□ -1.24
SMARCA1P28370 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
SMARCA1P28370 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
SMARCA1P28370 GUCY1B2-204ENST00000531898 1979 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC7.3□□□□□ -1.24
SMARCA1P28370 CXCR2P1-202ENST00000443392 1074 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 UCK2-205ENST00000469256 753 ntTSL 3 BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms