Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC074140.1-201ENST00000621617 208 ntBASIC6.28□□□□□ -1.4
VMP1Q96GC9 AC027559.1-201ENST00000636288 271 ntBASIC6.28□□□□□ -1.4
VMP1Q96GC9 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VMP1Q96GC9 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VMP1Q96GC9 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
VMP1Q96GC9 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
VMP1Q96GC9 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
VMP1Q96GC9 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.28□□□□□ -1.4
VMP1Q96GC9 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
VMP1Q96GC9 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
VMP1Q96GC9 AL353796.1-201ENST00000561542 3241 ntBASIC6.28□□□□□ -1.4
VMP1Q96GC9 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.27□□□□□ -1.4
VMP1Q96GC9 SMG1P7-201ENST00000565246 2704 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC024651.2-201ENST00000562480 2098 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC010894.1-201ENST00000313760 361 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL589794.1-201ENST00000424971 390 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC106901.1-201ENST00000425086 698 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL138787.1-202ENST00000437804 898 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 PA2G4P1-201ENST00000442248 1197 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC073476.1-201ENST00000452854 407 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC099340.1-201ENST00000475247 599 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 RN7SL612P-201ENST00000497704 295 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC084851.2-201ENST00000530377 364 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 ANP32BP1-202ENST00000568553 737 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 RN7SL66P-201ENST00000582099 264 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AL359704.2-201ENST00000604335 521 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC010333.3-201ENST00000615100 402 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 U1.41-201ENST00000617626 165 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 MIR7854-201ENST00000620068 65 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC004836.1-201ENST00000623032 634 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC005514.1-201ENST00000623521 208 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 AC010132.4-201ENST00000569883 1368 ntBASIC6.27□□□□□ -1.41
VMP1Q96GC9 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VMP1Q96GC9 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VMP1Q96GC9 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VMP1Q96GC9 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 RNA5SP321-201ENST00000362722 111 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 RAB5CP1-201ENST00000395972 580 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 AL034417.1-201ENST00000399343 800 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 AL121977.1-201ENST00000401636 979 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 RNA5SP155-201ENST00000411154 129 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 VN1R53P-201ENST00000429536 957 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 RPEP4-201ENST00000437636 602 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.26□□□□□ -1.41
VMP1Q96GC9 AL445991.1-201ENST00000450381 475 ntBASIC6.26□□□□□ -1.41
VMP1Q96GC9 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms