Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AL121977.1-201ENST00000401636 979 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC099535.1-201ENST00000408928 371 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 RPL21P50-201ENST00000417698 477 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 FABP5P1-201ENST00000423401 411 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 MED28P4-201ENST00000433137 572 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 SEPT7P3-201ENST00000455017 621 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 RN7SL649P-201ENST00000496974 275 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 OR4A42P-201ENST00000531397 938 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AL589863.1-201ENST00000595383 631 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 IGKV2OR2-1-201ENST00000605129 304 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AL359091.2-201ENST00000609303 556 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 LINC02495-203ENST00000636704 242 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC023245.2-201ENST00000530760 2978 ntBASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC105114.1-201ENST00000624795 1862 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 RNA5SP512-201ENST00000364550 120 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 CASKP1-201ENST00000412870 582 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 GTF3AP6-201ENST00000432585 986 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 OR2L9P-201ENST00000444456 913 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC236972.4-201ENST00000458091 963 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 SNORA58-201ENST00000505219 137 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 OR52K3P-201ENST00000531655 943 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 COG2-209ENST00000534989 2963 ntTSL 2 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC133552.4-201ENST00000576103 676 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AC012676.3-201ENST00000614983 479 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AL596244.1-201ENST00000567068 3779 ntBASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CHMP4AQ9BY43 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC8.34□□□□□ -1.08
CHMP4AQ9BY43 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 TATDN2P3-201ENST00000452855 3665 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AC232271.1-201ENST00000602455 2715 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 SNORD16-201ENST00000362803 99 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 RPL7AP51-201ENST00000422016 760 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AC099782.1-201ENST00000425889 474 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms