| MUC4 | Q99102 | FGF13-202 | ENST00000315930 | 19519 nt | APPRIS P1 TSL 1 (best) BASIC | 4.65 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | VEPH1-205 | ENST00000468233 | 1401 nt | TSL 1 (best) BASIC | 4.65 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OR51E2-203 | ENST00000641638 | 2626 nt | APPRIS P1 BASIC | 4.65 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | POM121L2-202 | ENST00000444565 | 3108 nt | APPRIS P2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | PTPRD-206 | ENST00000397617 | 8248 nt | TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ASNS-209 | ENST00000444334 | 1812 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC105235.1-201 | ENST00000623208 | 1816 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MPP5-204 | ENST00000555925 | 5006 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | NAV3-202 | ENST00000536525 | 7386 nt | APPRIS P1 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AP4E1-203 | ENST00000560508 | 6653 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC01504-201 | ENST00000436054 | 2078 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OR4D5-201 | ENST00000307033 | 1095 nt | APPRIS P1 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OR13F1-201 | ENST00000334726 | 960 nt | APPRIS P1 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RNA5SP443-201 | ENST00000363083 | 132 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | SNORA70.9-201 | ENST00000384370 | 135 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | SMARCE1P6-201 | ENST00000398372 | 1216 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL136100.1-201 | ENST00000407696 | 330 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | NUTM2A-AS1-203 | ENST00000413961 | 501 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC00437-201 | ENST00000414161 | 791 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MTND4LP17-201 | ENST00000414607 | 293 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RPSAP32-201 | ENST00000432681 | 526 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL020997.1-201 | ENST00000446554 | 349 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MLF1-205 | ENST00000469452 | 1098 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC114728.1-201 | ENST00000488289 | 483 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RPL5P14-201 | ENST00000494197 | 878 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC091874.2-201 | ENST00000505889 | 720 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC131392.1-201 | ENST00000506490 | 633 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ST13P12-201 | ENST00000508958 | 1094 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC112242.1-201 | ENST00000515805 | 406 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC011853.1-201 | ENST00000518911 | 454 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AZIN1-AS1-211 | ENST00000520455 | 480 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AP001831.1-201 | ENST00000524610 | 411 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | PATE4-203 | ENST00000534411 | 897 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ASXL1-208 | ENST00000555343 | 1034 nt | TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL359232.1-202 | ENST00000556874 | 1206 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC026956.1-201 | ENST00000558741 | 396 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC010325.2-201 | ENST00000594114 | 260 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | IGFL2-AS1-206 | ENST00000601263 | 446 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL035587.1-202 | ENST00000607218 | 984 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ALG10-201 | ENST00000266483 | 3128 nt | APPRIS P1 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC104662.2-201 | ENST00000512921 | 1388 nt | APPRIS P1 TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC016831.1-201 | ENST00000432045 | 6411 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL353763.1-201 | ENST00000624467 | 1628 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL031123.3-201 | ENST00000623345 | 1837 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | VPS35-201 | ENST00000299138 | 6790 nt | APPRIS P1 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC01793-201 | ENST00000409590 | 2036 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ZNF615-204 | ENST00000594083 | 4020 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC068769.1-201 | ENST00000474767 | 2426 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OSBPL9-206 | ENST00000453295 | 2842 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RIMS1-219 | ENST00000523963 | 3097 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OR5AN1-202 | ENST00000641850 | 8468 nt | APPRIS P1 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL442071.1-201 | ENST00000289890 | 558 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RNU1-5P-201 | ENST00000362684 | 144 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | TMA16P2-201 | ENST00000413187 | 601 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | PTPN2P1-201 | ENST00000423212 | 1072 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL031846.1-202 | ENST00000424436 | 592 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | TMEM246-AS1-202 | ENST00000425734 | 466 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL133329.1-201 | ENST00000437466 | 478 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL136460.1-201 | ENST00000442389 | 473 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC139712.3-201 | ENST00000443926 | 639 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | SNX24-205 | ENST00000506996 | 588 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC131182.1-201 | ENST00000509184 | 657 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC108043.1-201 | ENST00000512696 | 574 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC016405.1-202 | ENST00000524348 | 758 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | OR6M2P-201 | ENST00000529831 | 871 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | EBF2-204 | ENST00000535548 | 1017 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC01906-201 | ENST00000582962 | 499 nt | TSL 4 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RN7SL475P-201 | ENST00000583379 | 298 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC119868.1-202 | ENST00000584741 | 347 nt | TSL 2 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ODF4-202 | ENST00000584943 | 804 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AC006262.3-201 | ENST00000597337 | 258 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL138895.2-201 | ENST00000603019 | 178 nt | BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RSU1P2-204 | ENST00000619977 | 1240 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ATXN2-202 | ENST00000389153 | 3854 nt | APPRIS ALT2 TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC02477-201 | ENST00000512652 | 1417 nt | TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC00293-204 | ENST00000521715 | 1498 nt | TSL 1 (best) BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MCM10-201 | ENST00000378694 | 4587 nt | TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LSAMP-207 | ENST00000539563 | 8821 nt | TSL 3 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | SLC35A5-201 | ENST00000261034 | 2444 nt | TSL 5 BASIC | 4.64 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | GCNT2-201 | ENST00000265012 | 4214 nt | APPRIS P3 TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | POLR1D-218 | ENST00000636817 | 4592 nt | TSL 5 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | HAUS3-201 | ENST00000243706 | 5620 nt | APPRIS P1 TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | NEMP2-202 | ENST00000409150 | 6168 nt | APPRIS P1 TSL 2 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MEIS1-201 | ENST00000272369 | 4291 nt | APPRIS P2 TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | C16orf62-204 | ENST00000448695 | 3353 nt | TSL 5 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | C16orf62-216 | ENST00000543152 | 3352 nt | TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ZNF329-201 | ENST00000358067 | 3290 nt | APPRIS P1 TSL 2 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ADGRE1-202 | ENST00000312053 | 3128 nt | APPRIS P3 TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | CYLD-210 | ENST00000566206 | 3104 nt | TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LRRTM4-205 | ENST00000409911 | 2976 nt | APPRIS ALT1 TSL 5 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | SORT1-209 | ENST00000538502 | 6993 nt | TSL 2 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | ZNF138-206 | ENST00000440598 | 2230 nt | TSL 2 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC01527-201 | ENST00000419578 | 1997 nt | TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | MCTP2-208 | ENST00000557742 | 1957 nt | TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | LINC01931-201 | ENST00000295052 | 1832 nt | TSL 2 BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | AL731532.1-201 | ENST00000623972 | 4236 nt | BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RPS29-201 | ENST00000245458 | 296 nt | APPRIS P1 TSL 1 (best) BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RN7SKP130-201 | ENST00000364924 | 301 nt | BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RN7SKP281-201 | ENST00000410472 | 352 nt | BASIC | 4.63 | □□□□□ -1.67 | | |
| MUC4 | Q99102 | RNU4-64P-201 | ENST00000410795 | 131 nt | BASIC | 4.63 | □□□□□ -1.67 | | |