Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 MTCO2P1-201ENST00000424648 477 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 EEF1B2P3-201ENST00000447718 678 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 PRDX1P1-201ENST00000449329 596 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RPL23AP23-201ENST00000452590 471 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RN7SL654P-201ENST00000479178 292 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 SUMO1P1-201ENST00000497904 306 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 OR4A17P-201ENST00000526032 904 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC004923.2-201ENST00000529649 369 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 ACTG1P15-201ENST00000570019 1063 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 OR1AB1P-201ENST00000585564 761 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 DIMT1P1-201ENST00000603970 763 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 WBP1LP12-201ENST00000604449 331 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC026979.4-201ENST00000606555 645 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC112503.2-201ENST00000609005 552 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 MIR8084-201ENST00000614105 89 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC095038.2-201ENST00000621464 1070 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC105105.5-201ENST00000622635 1294 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AL136531.3-201ENST00000624378 3658 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AP001002.2-201ENST00000625137 386 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 AC087269.2-201ENST00000641764 975 ntBASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC144BQ3MJ40 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AP005139.1-201ENST00000580702 1647 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 JPX-212ENST00000639185 9658 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 NENFP1-201ENST00000419476 466 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 DUTP4-201ENST00000424782 475 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AL121916.1-201ENST00000429405 308 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 RPL37P23-201ENST00000492641 294 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 HMGN1P17-201ENST00000513734 295 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 RNA5SP278-201ENST00000517055 102 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 OR4A41P-201ENST00000533053 928 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AC027667.1-201ENST00000545814 304 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 AC008126.1-201ENST00000549019 480 ntBASIC7.81□□□□□ -1.16
CCDC144BQ3MJ40 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms