Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL020997.1-201ENST00000446554 349 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AL022237.1-201ENST00000446663 358 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 RPS27AP3-201ENST00000453803 454 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 VPS25P1-201ENST00000455691 508 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 RPS7P10-201ENST00000464254 603 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 SLC25A51P1-201ENST00000468432 871 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC093664.1-201ENST00000511779 289 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 IGKV2-19-201ENST00000518132 283 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 TPRX1P1-201ENST00000557620 319 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 MIR3189-201ENST00000578735 73 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 MIR6780B-201ENST00000610307 79 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 LINC02495-203ENST00000636704 242 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HLA-DMBP28068 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HLA-DMBP28068 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HLA-DMBP28068 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HLA-DMBP28068 AL121839.2-201ENST00000565058 6943 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 AC005702.3-201ENST00000585345 1447 ntBASIC4.79□□□□□ -1.64
HLA-DMBP28068 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC4.79□□□□□ -1.64
HLA-DMBP28068 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HLA-DMBP28068 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 USP9YP3-201ENST00000434481 1766 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AP001541.1-201ENST00000623322 1904 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL121768.1-201ENST00000613917 2544 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 SMG1P5-202ENST00000529428 4219 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 SMG1P2-201ENST00000566127 4221 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 SNORA64.3-201ENST00000365647 134 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 MRPS6P2-201ENST00000381143 370 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC099535.1-201ENST00000408928 371 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL645939.3-201ENST00000435408 225 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC234771.2-201ENST00000445718 597 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 RN7SL741P-201ENST00000482473 289 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 RPL29P23-201ENST00000486188 442 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC093870.1-201ENST00000506837 213 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC093815.1-201ENST00000508637 280 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC037479.1-201ENST00000558361 625 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 MIR3157-201ENST00000578688 85 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC004805.3-201ENST00000603178 310 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AC114477.1-201ENST00000605097 605 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL021368.3-201ENST00000607119 578 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL008582.1-201ENST00000609612 442 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 GAPDHP41-201ENST00000613707 975 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 AP000550.3-201ENST00000637734 379 ntBASIC4.78□□□□□ -1.64
HLA-DMBP28068 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HLA-DMBP28068 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
HLA-DMBP28068 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.65
HLA-DMBP28068 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC4.77□□□□□ -1.65
HLA-DMBP28068 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HLA-DMBP28068 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HLA-DMBP28068 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HLA-DMBP28068 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms