Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GSDMC-201ENST00000276708 2714 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 GPD2-202ENST00000409125 2661 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 CNIH4-202ENST00000366857 3963 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 ARMCX7P-201ENST00000372828 562 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 Y_RNA.422-201ENST00000384054 114 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
COL8A1P27658 IL6-206ENST00000407492 926 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC099535.1-201ENST00000408928 371 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 TMX2P1-201ENST00000436507 708 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 CEACAMP5-201ENST00000448037 961 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 AC069213.3-201ENST00000454858 474 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 GTF2IP12-201ENST00000456547 356 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 RPL7AP26-201ENST00000488538 813 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC022695.2-201ENST00000518042 768 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 IGHVIII-38-1-201ENST00000521454 282 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 MTCO3P15-201ENST00000526563 574 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC7.13□□□□□ -1.27
COL8A1P27658 LINC02345-202ENST00000558081 1147 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 AC020687.1-201ENST00000560439 448 ntTSL 3 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC093524.1-201ENST00000564266 1094 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL355598.1-201ENST00000604169 202 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AC008385.1-201ENST00000604421 355 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AC006449.1-201ENST00000616263 571 ntTSL 4 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL078596.1-201ENST00000624856 447 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 AC016582.3-206ENST00000636547 207 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 SP110-215ENST00000540870 2032 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 RNF214-204ENST00000530849 2846 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 OSBPL3-202ENST00000396429 2707 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 AC012409.5-201ENST00000624746 3424 ntBASIC7.13□□□□□ -1.27
COL8A1P27658 METTL7A-201ENST00000332160 3390 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 BRDT-205ENST00000399546 3357 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 TRHR-202ENST00000518632 1660 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 MTRR-201ENST00000264668 3274 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 TET1P1-201ENST00000426627 2301 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 ARG1-203ENST00000368087 1532 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 AL353743.4-201ENST00000422653 1547 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AL133384.2-201ENST00000623755 2954 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC132825.4-201ENST00000582527 3644 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 LARP1BP1-201ENST00000506036 1359 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SEPT4-211ENST00000579371 1362 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 BPNT1-205ENST00000469520 2737 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 ZNF619-210ENST00000522736 2030 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 PIGK-201ENST00000359130 1926 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 RN7SKP63-201ENST00000363187 301 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 Y_RNA.401-201ENST00000383965 117 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 MIR595-201ENST00000384905 96 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 TAF9BP1-201ENST00000396646 746 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RPS3AP23-201ENST00000401762 784 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
COL8A1P27658 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 RN7SKP221-201ENST00000410420 301 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RN7SKP131-201ENST00000410698 301 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RN7SKP137-201ENST00000411074 307 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RNU2-18P-201ENST00000411224 162 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 HCG21-204ENST00000419481 605 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 TIMM9P3-201ENST00000428659 274 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SNX18P14-201ENST00000429308 574 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 FGF12-202ENST00000430714 603 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 WDR82P1-201ENST00000439836 939 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RPS4XP4-201ENST00000443195 763 ntBASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms