Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 RARRES2P3-201ENST00000457739 473 ntBASIC6.28□□□□□ -1.4
MSH3P20585 RN7SL836P-201ENST00000476140 296 ntBASIC6.28□□□□□ -1.4
MSH3P20585 RN7SL369P-201ENST00000477138 299 ntBASIC6.28□□□□□ -1.4
MSH3P20585 RN7SL165P-201ENST00000477476 291 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC098818.1-201ENST00000478593 252 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC005017.1-201ENST00000482002 490 ntBASIC6.28□□□□□ -1.4
MSH3P20585 RPL9P15-201ENST00000491096 532 ntBASIC6.28□□□□□ -1.4
MSH3P20585 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 AC092349.1-201ENST00000504903 310 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC010343.2-201ENST00000510162 224 ntBASIC6.28□□□□□ -1.4
MSH3P20585 SUMO2P19-201ENST00000518920 295 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.28□□□□□ -1.4
MSH3P20585 AC090115.2-201ENST00000548060 883 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC009729.1-201ENST00000548873 1133 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.28□□□□□ -1.4
MSH3P20585 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 OR7A8P-201ENST00000595427 913 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC024255.1-201ENST00000614376 102 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 AC005899.7-201ENST00000618199 588 ntBASIC6.28□□□□□ -1.4
MSH3P20585 MIR7159-201ENST00000620587 66 ntBASIC6.28□□□□□ -1.4
MSH3P20585 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 AC010325.3-201ENST00000641084 394 ntBASIC6.28□□□□□ -1.4
MSH3P20585 OR7E91P-202ENST00000642062 1198 ntBASIC6.28□□□□□ -1.4
MSH3P20585 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 AL136984.1-201ENST00000607611 1893 ntBASIC6.28□□□□□ -1.4
MSH3P20585 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSH3P20585 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 RN7SKP250-201ENST00000363924 321 ntBASIC6.27□□□□□ -1.41
MSH3P20585 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 AC116036.1-201ENST00000412199 367 ntBASIC6.27□□□□□ -1.41
MSH3P20585 MTND2P12-201ENST00000417560 1252 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 VN1R20P-201ENST00000425215 966 ntBASIC6.27□□□□□ -1.41
MSH3P20585 RPSAP32-201ENST00000432681 526 ntBASIC6.27□□□□□ -1.41
MSH3P20585 CXCR2P1-202ENST00000443392 1074 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 OR13K1P-201ENST00000444577 975 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 AC007383.1-201ENST00000445875 636 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AL451063.1-201ENST00000450164 1133 ntBASIC6.27□□□□□ -1.41
MSH3P20585 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 H3F3AP5-201ENST00000475267 429 ntBASIC6.27□□□□□ -1.41
MSH3P20585 EIF4E2P2-201ENST00000492033 736 ntBASIC6.27□□□□□ -1.41
MSH3P20585 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 GUSBP9-201ENST00000510138 584 ntBASIC6.27□□□□□ -1.41
MSH3P20585 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 OR7E158P-201ENST00000524483 910 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AP003033.2-201ENST00000528901 805 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.27□□□□□ -1.41
MSH3P20585 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.27□□□□□ -1.41
MSH3P20585 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 RN7SL230P-201ENST00000580835 303 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 AL139041.1-201ENST00000605480 610 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AC107308.1-201ENST00000615897 301 ntBASIC6.27□□□□□ -1.41
MSH3P20585 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AP003789.1-201ENST00000617737 605 ntBASIC6.27□□□□□ -1.41
MSH3P20585 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 AP001157.1-201ENST00000550837 2339 ntBASIC6.27□□□□□ -1.41
MSH3P20585 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.27□□□□□ -1.41
MSH3P20585 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSH3P20585 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSH3P20585 LINC01616-201ENST00000561816 2280 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms