Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 NBPF15-203ENST00000577412 4707 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL6A3P12111 AC243756.2-201ENST00000618406 463 ntBASIC6.08□□□□□ -1.44
COL6A3P12111 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A3P12111 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A3P12111 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 TIAM2-203ENST00000360366 5771 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 ZNF83-211ENST00000597597 4442 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 AP000892.3-201ENST00000624094 5326 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 FAM3C2-201ENST00000312214 681 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 AC000068.2-201ENST00000608816 460 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 AC087269.2-201ENST00000641764 975 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 MAPK10-287ENST00000641217 3037 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL6A3P12111 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 SCN5A-204ENST00000414099 8303 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 AP005139.1-201ENST00000580702 1647 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 AC011493.1-201ENST00000596753 1632 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 ZNF557-202ENST00000414706 5736 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
COL6A3P12111 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A3P12111 CUBNP2-201ENST00000443534 1139 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 AL109766.1-201ENST00000555080 552 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A3P12111 MIR6830-201ENST00000636015 70 ntBASIC6.07□□□□□ -1.44
COL6A3P12111 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A3P12111 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
COL6A3P12111 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A3P12111 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A3P12111 RPL23AP72-201ENST00000492447 435 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 MIR4284-201ENST00000578924 81 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AL118522.2-201ENST00000616045 615 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 MYH10-201ENST00000269243 7662 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 MYH10-203ENST00000379980 7694 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 RPEL1-201ENST00000441178 2130 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL6A3P12111 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 AC114947.2-201ENST00000565748 2125 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 KIF24-201ENST00000379174 5729 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 BCAT1-201ENST00000261192 9674 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A3P12111 RPL7P16-201ENST00000479738 738 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AC008629.2-201ENST00000503783 483 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 OR7H2P-201ENST00000513483 306 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 MRPS21P7-201ENST00000566937 238 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A3P12111 AL161616.1-201ENST00000611867 286 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 C1RL-AS1-205ENST00000541775 5272 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 AC087516.1-201ENST00000561236 2428 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 SLC12A1-203ENST00000396577 4708 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
COL6A3P12111 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A3P12111 SNURFL-201ENST00000309296 343 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 OR11H13P-201ENST00000359695 979 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 RNU1-85P-201ENST00000364127 164 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AC068287.1-201ENST00000430283 295 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 MED28P3-201ENST00000444288 531 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A3P12111 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.06□□□□□ -1.44
COL6A3P12111 IGHV3-57-201ENST00000520143 280 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AC009117.1-201ENST00000563948 554 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 AC093799.2-201ENST00000610062 578 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 WBP1LP8-201ENST00000617401 327 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms