Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXD4P09016 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXD4P09016 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HOXD4P09016 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HOXD4P09016 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 AP003170.5-201ENST00000397185 335 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 YWHAZP6-201ENST00000399764 738 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 NPM1P37-201ENST00000403105 874 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 AC242426.1-201ENST00000435270 960 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 BTG3P1-201ENST00000435859 716 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 RN7SL221P-201ENST00000466190 281 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXD4P09016 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.86□□□□□ -1.47
HOXD4P09016 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 RNA5SP441-201ENST00000516809 88 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 MIR4502-201ENST00000580432 81 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 OR7A8P-201ENST00000595427 913 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 AC125494.2-201ENST00000602431 657 ntBASIC5.86□□□□□ -1.47
HOXD4P09016 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXD4P09016 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.86□□□□□ -1.47
HOXD4P09016 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.86□□□□□ -1.47
HOXD4P09016 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXD4P09016 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 RACGAP1P-201ENST00000550663 1879 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXD4P09016 MTCO1P25-201ENST00000414449 1799 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXD4P09016 MSL3P1-202ENST00000440028 1468 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC087516.1-201ENST00000561236 2428 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 AC022613.3-201ENST00000560740 1346 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 RN7SKP186-201ENST00000365371 303 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 RNA5SP77-201ENST00000365394 120 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 RPL21P50-201ENST00000417698 477 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HOXD4P09016 AL355994.1-201ENST00000424379 260 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXD4P09016 AC003989.1-201ENST00000434569 565 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 BX679664.2-201ENST00000439282 283 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXD4P09016 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXD4P09016 AC018645.1-201ENST00000505003 109 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 TRIM51DP-201ENST00000529746 596 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AP004609.2-201ENST00000532177 190 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC125612.1-201ENST00000547580 377 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 AC133552.4-201ENST00000576103 676 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC060766.1-201ENST00000590824 627 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXD4P09016 AC091193.1-201ENST00000604640 448 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXD4P09016 GTF2IP4-201ENST00000453092 2054 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 AC013488.1-201ENST00000526618 1838 ntBASIC5.85□□□□□ -1.47
HOXD4P09016 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXD4P09016 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXD4P09016 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 TNPO1P2-201ENST00000426249 2665 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms