Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CTH-201ENST00000346806 1196 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 TRBV6-1-201ENST00000390353 401 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 SNORA68.2-201ENST00000391263 128 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 HMGB3P1-201ENST00000393368 573 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 SNORA79B-201ENST00000410557 148 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 U3.43-201ENST00000410734 213 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 PPIAP30-201ENST00000415473 519 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CELSR3-AS1-201ENST00000421275 196 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC006460.1-201ENST00000421437 808 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC104843.2-201ENST00000427666 297 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 LINC01425-202ENST00000430060 760 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 MYL6P3-201ENST00000436904 432 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AL023584.1-201ENST00000437067 349 ntTSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC009237.4-201ENST00000441078 238 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RPL12P44-201ENST00000442319 502 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 UBE2D4-206ENST00000446008 783 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 LINC01830-201ENST00000450551 636 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC093799.1-201ENST00000452411 499 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RPL10P6-201ENST00000457497 318 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CREM-220ENST00000463314 964 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC022730.2-201ENST00000465359 452 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RN7SL518P-201ENST00000491887 280 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC008040.4-201ENST00000494834 768 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 TRIM60P15-201ENST00000509929 712 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC090958.1-201ENST00000511122 351 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CYP4F27P-201ENST00000514557 494 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AP003499.1-201ENST00000527217 574 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AP001372.1-202ENST00000533008 344 ntTSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 OR7E2P-201ENST00000533071 889 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 GNPTAB-203ENST00000549165 373 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RD3L-201ENST00000557640 1201 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC090971.3-201ENST00000557871 1041 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 MYL12A-206ENST00000578611 1004 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RN7SL15P-201ENST00000582825 301 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 EIF1-207ENST00000591776 797 ntTSL 4 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 LINC00632-203ENST00000602535 723 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AL021808.1-201ENST00000604325 1117 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 YTHDF2P1-201ENST00000604759 1271 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AL445649.1-201ENST00000615941 691 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 OR8G7P-201ENST00000616658 848 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 SMIM2-202ENST00000617002 255 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC067904.3-201ENST00000617126 261 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC131238.1-201ENST00000617135 328 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC006840.1-201ENST00000623069 542 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC114546.4-201ENST00000624413 369 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC027176.3-201ENST00000624460 586 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 NF1P9-202ENST00000629550 966 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 AC012560.1-201ENST00000634930 459 ntTSL 3 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 EEF1A1P16-201ENST00000325349 1414 ntBASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 IRAK4-202ENST00000440781 1409 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHKB-CPT1BH3BT56 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 ERMARD-205ENST00000418781 1841 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 DIO2-AS1-201ENST00000553979 1597 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 KRTAP6-2-201ENST00000334897 313 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CHKB-CPT1BH3BT56 ZNF880-201ENST00000344085 496 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms