Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL17P2-201ENST00000491913 451 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AL133372.1-201ENST00000493565 745 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 RNA5SP518-201ENST00000515957 119 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 SCARNA6-201ENST00000515982 265 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 RPS20-202ENST00000518875 671 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AP003084.1-201ENST00000524828 742 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 OR7E161P-201ENST00000533722 967 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 LYZ-203ENST00000549690 669 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 OR7A8P-201ENST00000595427 913 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC245297.2-201ENST00000610119 565 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AP000676.3-201ENST00000623299 569 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC098679.5-201ENST00000624394 571 ntBASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.94□□□□□ -1.14
CCDC39Q9UFE4 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 RNU4-24P-201ENST00000364565 139 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC233289.1-201ENST00000403700 508 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 RN7SKP271-201ENST00000410528 320 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 TRIM60P5Y-201ENST00000413946 574 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 DNAJA1P1-201ENST00000425106 1187 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 GTF3AP6-201ENST00000432585 986 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AL604028.2-201ENST00000437848 788 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AL138878.2-201ENST00000440581 1241 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 PRKAR1AP1-201ENST00000441422 1162 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 OR51P1P-201ENST00000447547 942 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 PCMTD1P3-201ENST00000451824 472 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC135721.2-201ENST00000464237 300 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 RPL23AP8-201ENST00000479812 475 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 MTND4LP2-201ENST00000502312 285 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 NACAP6-201ENST00000509572 622 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC021146.10-201ENST00000515628 706 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 SUMO2P19-201ENST00000518920 295 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 ASB8-203ENST00000535988 679 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC090971.3-201ENST00000557871 1041 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC109446.2-201ENST00000567872 497 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 MIR4685-201ENST00000578185 69 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC103987.3-201ENST00000582071 292 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 COX6CP16-201ENST00000603667 216 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC111186.1-201ENST00000604684 130 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 RBM11P1-201ENST00000604951 799 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AL353621.2-201ENST00000605340 133 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC017083.3-201ENST00000609955 700 ntBASIC7.93□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms