Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 RN7SKP69-201ENST00000365390 305 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC011742.2-201ENST00000443818 352 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC010240.2-201ENST00000445363 1205 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 BZW1P1-201ENST00000454901 1240 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 RPL5P12-201ENST00000477071 851 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC106800.2-201ENST00000514009 1103 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 IGHV3-57-201ENST00000520143 280 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL161912.3-201ENST00000605404 628 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC108865.2-201ENST00000606881 432 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC005899.7-201ENST00000618199 588 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AC073488.6-201ENST00000632293 754 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 AL353743.3-201ENST00000442109 1468 ntBASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
HDDC3Q8N4P3 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL157702.1-201ENST00000398764 426 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 RN7SKP229-201ENST00000410465 302 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 RPL36P18-201ENST00000419316 318 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC104843.2-201ENST00000427666 297 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL645936.1-201ENST00000441979 518 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 RBBP4P1-201ENST00000502424 1276 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC093225.1-201ENST00000506867 1408 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 RNA5SP206-201ENST00000516703 121 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC027369.2-201ENST00000528030 440 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC090286.3-201ENST00000573133 187 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 RN7SL475P-201ENST00000583379 298 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 AL359976.1-201ENST00000418655 3528 ntBASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
HDDC3Q8N4P3 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms