Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 MFSD8-217ENST00000641178 4374 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
BRCA1P38398 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.36□□□□□ -1.23
BRCA1P38398 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.36□□□□□ -1.23
BRCA1P38398 AC100832.1-201ENST00000471945 383 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RN7SL808P-201ENST00000496066 299 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AC008629.2-201ENST00000503783 483 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AC110775.1-201ENST00000513721 462 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC7.36□□□□□ -1.23
BRCA1P38398 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 CR383656.6-201ENST00000550518 394 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.36□□□□□ -1.23
BRCA1P38398 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.36□□□□□ -1.23
BRCA1P38398 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 AC131649.2-201ENST00000624925 4439 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
BRCA1P38398 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
BRCA1P38398 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
BRCA1P38398 Z80107.2-201ENST00000445127 392 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 MGAT2P1-201ENST00000449718 797 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 AL139156.3-201ENST00000454802 394 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.35□□□□□ -1.23
BRCA1P38398 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.35□□□□□ -1.23
BRCA1P38398 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.35□□□□□ -1.23
BRCA1P38398 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
BRCA1P38398 SALL4P7-201ENST00000555779 3120 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.35□□□□□ -1.23
BRCA1P38398 AC104964.2-201ENST00000562242 4641 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
BRCA1P38398 AC023421.1-201ENST00000590535 1785 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.35□□□□□ -1.23
BRCA1P38398 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.35□□□□□ -1.23
BRCA1P38398 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.34□□□□□ -1.23
BRCA1P38398 DUTP4-201ENST00000424782 475 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AC073850.1-201ENST00000449243 255 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 RPL23AP60-201ENST00000450011 454 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.34□□□□□ -1.23
BRCA1P38398 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.34□□□□□ -1.23
BRCA1P38398 AP000676.2-201ENST00000529711 301 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 MIR4436B2-201ENST00000581415 91 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 MIR4436B1-201ENST00000583272 91 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.34□□□□□ -1.23
BRCA1P38398 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.34□□□□□ -1.23
BRCA1P38398 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.34□□□□□ -1.23
BRCA1P38398 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 GUCY1B2-204ENST00000531898 1979 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
BRCA1P38398 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
BRCA1P38398 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
BRCA1P38398 RN7SKP29-201ENST00000410957 272 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 RPL23AP27-201ENST00000415161 451 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.34□□□□□ -1.23
BRCA1P38398 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.34□□□□□ -1.23
BRCA1P38398 AL450996.1-201ENST00000445574 1202 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AL645937.3-201ENST00000453647 936 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.34□□□□□ -1.23
BRCA1P38398 AC093890.1-201ENST00000502554 540 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.34□□□□□ -1.23
BRCA1P38398 AC021146.10-201ENST00000515628 706 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC7.34□□□□□ -1.23
BRCA1P38398 AC004825.1-201ENST00000555068 586 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AC090510.2-201ENST00000617465 629 ntBASIC7.34□□□□□ -1.23
BRCA1P38398 AC087269.2-201ENST00000641764 975 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms