Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC105342.1-201ENST00000378334 6848 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 RNA5SP211-201ENST00000365516 117 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.55□□□□□ -1.2
COL5A3P25940 SPTLC1P2-201ENST00000407089 121 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.55□□□□□ -1.2
COL5A3P25940 GABARAPL3-201ENST00000412799 354 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 VDAC1P2-201ENST00000423609 850 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 OR5W1P-201ENST00000423705 938 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AC099677.3-201ENST00000427081 395 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.55□□□□□ -1.2
COL5A3P25940 CFL1P1-202ENST00000432948 411 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.55□□□□□ -1.2
COL5A3P25940 RPS12P17-201ENST00000438591 377 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.55□□□□□ -1.2
COL5A3P25940 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 AC022215.1-201ENST00000481770 362 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 RN7SL547P-201ENST00000490793 290 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 HAUS8P1-201ENST00000549005 542 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AC007204.2-201ENST00000615022 616 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 FO082842.1-201ENST00000423552 1370 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC7.55□□□□□ -1.2
COL5A3P25940 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.55□□□□□ -1.2
COL5A3P25940 AL359976.1-201ENST00000418655 3528 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC7.54□□□□□ -1.2
COL5A3P25940 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.54□□□□□ -1.2
COL5A3P25940 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 MFSD8-218ENST00000641186 4448 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.54□□□□□ -1.2
COL5A3P25940 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 RNA5SP350-201ENST00000363298 111 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 RNU4-34P-201ENST00000410431 124 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.54□□□□□ -1.2
COL5A3P25940 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.54□□□□□ -1.2
COL5A3P25940 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC7.54□□□□□ -1.2
COL5A3P25940 LRRC37A14P-201ENST00000452297 462 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.54□□□□□ -1.2
COL5A3P25940 BX510359.5-201ENST00000515651 304 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 IGHVIII-13-1-201ENST00000517613 291 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.54□□□□□ -1.2
COL5A3P25940 AC089998.1-201ENST00000548575 3141 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 IGBP1P1-201ENST00000554337 1009 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.54□□□□□ -1.2
COL5A3P25940 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.54□□□□□ -1.2
COL5A3P25940 PARP4P2-201ENST00000446672 3326 ntBASIC7.54□□□□□ -1.2
COL5A3P25940 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
COL5A3P25940 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL5A3P25940 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 RPS4XP5-201ENST00000419038 768 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 RPL32P33-201ENST00000487023 394 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.53□□□□□ -1.2
COL5A3P25940 MRPS16P1-201ENST00000523462 412 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 OR10G5P-201ENST00000532733 358 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 AC239803.2-201ENST00000610161 430 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 AF117829.2-201ENST00000619538 361 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 MIR8080-201ENST00000622224 89 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.53□□□□□ -1.2
COL5A3P25940 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 C4BPAP1-201ENST00000415474 1893 ntBASIC7.53□□□□□ -1.2
COL5A3P25940 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL5A3P25940 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.53□□□□□ -1.2
COL5A3P25940 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
COL5A3P25940 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7.52□□□□□ -1.2
COL5A3P25940 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
COL5A3P25940 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
COL5A3P25940 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.52□□□□□ -1.2
COL5A3P25940 PTCD2P2-201ENST00000415579 1095 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.52□□□□□ -1.2
COL5A3P25940 AC015983.1-201ENST00000441577 373 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 AC008953.1-201ENST00000497334 318 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 AC109481.1-201ENST00000509173 282 ntBASIC7.52□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms