Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
COL6A1P12109 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC003989.1-201ENST00000434569 565 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 FTH1P20-201ENST00000434913 548 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 MAPRE1P3-201ENST00000435438 796 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC073072.2-201ENST00000447425 348 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 MTATP6P14-201ENST00000455189 673 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 AC021146.5-201ENST00000503544 545 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 ODF1-202ENST00000518835 368 ntTSL 3 BASIC7.42□□□□□ -1.22
COL6A1P12109 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 LECT2-205ENST00000522943 574 ntTSL 3 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC027369.2-201ENST00000528030 440 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC7.42□□□□□ -1.22
COL6A1P12109 MTATP6P24-201ENST00000576835 677 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC130456.6-201ENST00000623745 765 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC099654.9-201ENST00000637055 678 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 EEF1A1P21-201ENST00000512363 1344 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC7.42□□□□□ -1.22
COL6A1P12109 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC068733.2-201ENST00000605434 1418 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL6A1P12109 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 CR382285.2-201ENST00000624662 1495 ntBASIC7.42□□□□□ -1.22
COL6A1P12109 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 AF131215.2-201ENST00000531549 1710 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC107980.1-201ENST00000558671 3355 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC7.41□□□□□ -1.22
COL6A1P12109 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.41□□□□□ -1.22
COL6A1P12109 OR7E25P-201ENST00000344844 931 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AL035405.1-201ENST00000400795 710 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AL589655.1-201ENST00000405398 482 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 CYCSP17-201ENST00000407870 315 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 STAT4-203ENST00000409995 709 ntTSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 RN7SKP108-201ENST00000411367 328 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 EIF2S2P4-201ENST00000461070 984 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AC074386.1-201ENST00000476560 767 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 RPL5P12-201ENST00000477071 851 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 PPIAP19-201ENST00000486414 492 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 GM2AP2-201ENST00000491764 562 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AC027338.1-201ENST00000514840 825 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 RN7SKP35-201ENST00000517210 151 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 EEF1B2P2-201ENST00000519625 676 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.41□□□□□ -1.22
COL6A1P12109 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC090022.1-201ENST00000546569 311 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 CTSLP2-201ENST00000580501 394 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 MIR4701-201ENST00000583094 63 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC020915.5-201ENST00000596836 964 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC133794.1-201ENST00000602731 914 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AL671309.1-201ENST00000603750 544 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AC111186.1-201ENST00000604684 130 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 AL512624.1-201ENST00000613638 469 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL6A1P12109 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.41□□□□□ -1.22
COL6A1P12109 SMG1P5-202ENST00000529428 4219 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 SMG1P2-201ENST00000566127 4221 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 OFD1P8Y-201ENST00000449148 1433 ntBASIC7.41□□□□□ -1.22
COL6A1P12109 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
COL6A1P12109 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL6A1P12109 CASC19-246ENST00000641625 1606 ntBASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms