Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC002310.3-201ENST00000569728 723 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AL078601.3-201ENST00000573303 535 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 RN7SL753P-201ENST00000581238 290 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 SMIM12P1-201ENST00000603004 274 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXD4P09016 RN7SL261P-201ENST00000613441 282 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AL157762.1-201ENST00000619612 415 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC131009.3-201ENST00000621809 287 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AC025262.3-201ENST00000623666 360 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AC120057.5-201ENST00000623840 154 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AP001962.1-201ENST00000624114 559 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.88□□□□□ -1.47
HOXD4P09016 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HOXD4P09016 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC096992.2-201ENST00000609553 1684 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 AL162456.1-201ENST00000634535 2006 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC140134.1-201ENST00000511830 3544 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 AL161912.4-201ENST00000623889 2468 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HOXD4P09016 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HOXD4P09016 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 AL139805.1-201ENST00000407837 289 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC115283.1-201ENST00000427353 400 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC069154.1-201ENST00000432914 542 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC007679.3-201ENST00000434035 414 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 OR2L9P-201ENST00000444456 913 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC018638.3-201ENST00000461273 132 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 RN7SL39P-201ENST00000462264 297 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 NDUFA5P5-201ENST00000468361 342 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC108103.1-201ENST00000511286 446 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC008429.2-201ENST00000523057 864 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXD4P09016 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 AL034374.2-201ENST00000605281 548 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC025171.4-201ENST00000607250 1047 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC016590.3-201ENST00000611171 753 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.87□□□□□ -1.47
HOXD4P09016 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXD4P09016 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
HOXD4P09016 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXD4P09016 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HOXD4P09016 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXD4P09016 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms