Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL078595.2-201ENST00000605309 1780 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 RNU6-31P-201ENST00000384388 108 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 EEF1GP6-201ENST00000402309 905 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL451061.1-201ENST00000407887 862 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 RPS26P13-201ENST00000419030 330 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC009303.1-201ENST00000426307 352 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 SNX19-202ENST00000426933 888 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC027124.1-201ENST00000440852 466 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 RPS19P6-201ENST00000441327 433 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 RBMY2EP-202ENST00000456360 940 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL133480.2-201ENST00000456723 487 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC133963.2-201ENST00000513686 578 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AP001207.2-201ENST00000519490 539 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 SSU72P6-201ENST00000532644 488 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 MRPS36P5-201ENST00000551909 298 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL132657.2-201ENST00000564417 358 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC023827.2-201ENST00000566880 1061 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 MIR5682-201ENST00000584864 76 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 DUXAP3-201ENST00000603616 594 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 SUMO2P14-201ENST00000604488 293 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC002487.1-201ENST00000604565 994 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AP002345.2-201ENST00000609961 904 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC138907.10-201ENST00000623708 983 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AC019226.2-201ENST00000625973 424 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 TSHZ2-205ENST00000626626 670 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 FBXL21-201ENST00000297158 1305 ntBASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 C1D-202ENST00000407324 1379 ntTSL 3 BASIC6.95□□□□□ -1.3
TRIM39Q9HCM9 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL031651.1-201ENST00000615357 1438 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 RNA5SP442-201ENST00000365050 107 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 RNA5SP172-201ENST00000365061 118 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL359715.1-201ENST00000404330 555 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 EIF4A1P1-201ENST00000420241 934 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 HMGN1P6-201ENST00000438508 291 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC009518.3-201ENST00000438972 253 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 NANOGP9-201ENST00000439890 892 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC245047.2-201ENST00000441060 530 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL354872.1-201ENST00000456361 967 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 RPL34P34-201ENST00000465389 354 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 RN7SL849P-201ENST00000485236 295 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 GAPDHP71-201ENST00000511530 1003 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms