Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL7AP30-201ENST00000482859 796 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 SLC25A51P2-201ENST00000535708 889 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC068631.3-201ENST00000538831 225 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 OLR1-210ENST00000544577 924 ntTSL 5 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 DPPA3P2-201ENST00000553589 478 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC044913.1-201ENST00000557200 430 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 PDCD6IPP2-207ENST00000566321 1069 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 MIR4433B-201ENST00000581329 102 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AC010980.1-204ENST00000589724 585 ntTSL 5 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 SNX29P2-204ENST00000603801 875 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AL356986.1-201ENST00000604085 341 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AL133507.1-201ENST00000605269 557 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 U47924.1-201ENST00000606539 434 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AF131215.2-201ENST00000531549 1710 ntBASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRAIPQ9BWF2 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 TMCC1-AS1-204ENST00000605830 3496 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 DDX18P4-201ENST00000511690 1966 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 Y_RNA.169-201ENST00000363745 96 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 RN7SKP36-201ENST00000363997 312 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 RNU1-122P-201ENST00000365538 156 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 NOX1-203ENST00000372964 661 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 RNU6-98P-201ENST00000384173 107 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC090114.1-201ENST00000393266 448 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC114755.4-201ENST00000439114 443 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC104978.1-201ENST00000449387 391 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 MYO5BP2-201ENST00000449815 1277 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC233982.1-201ENST00000451247 436 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 RPS10P28-201ENST00000480396 498 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 BET1P1-201ENST00000482276 359 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 IMPA1P1-201ENST00000510718 842 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC138938.1-201ENST00000515431 782 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 YWHABP2-201ENST00000540201 713 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 UBE2CP1-201ENST00000557130 554 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AL451085.1-201ENST00000604546 690 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AL078624.2-201ENST00000605063 554 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AL353726.1-201ENST00000614041 1000 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC005899.7-201ENST00000618199 588 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC103564.3-201ENST00000621194 220 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 FKBP1AP4-201ENST00000631775 336 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC073488.7-201ENST00000633785 778 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC087821.2-201ENST00000637086 450 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 SSXP3-201ENST00000442971 1300 ntBASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 ACTG2-203ENST00000409731 1413 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC8.19□□□□□ -1.1
TRAIPQ9BWF2 IARS-205ENST00000443024 4341 ntTSL 5 BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms