Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC245052.7-201ENST00000601161 359 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC036176.3-201ENST00000602456 418 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC087468.1-201ENST00000604365 630 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 IGKV2OR2-7-201ENST00000604652 304 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AP003789.1-201ENST00000617737 605 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AF117829.2-201ENST00000619538 361 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AP003400.2-201ENST00000624036 666 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AL035425.4-201ENST00000624509 1063 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC069542.2-201ENST00000624816 216 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 AC092701.1-201ENST00000623627 1551 ntBASIC5.54□□□□□ -1.52
NKX3-1Q99801 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NKX3-1Q99801 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.54□□□□□ -1.52
NKX3-1Q99801 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC137056.2-201ENST00000624055 1958 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC110373.1-201ENST00000505994 3505 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC092634.1-201ENST00000366505 199 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 RPL7P58-201ENST00000402913 758 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR2W4P-201ENST00000406496 926 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AL845321.1-201ENST00000444603 348 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC103563.5-201ENST00000455643 364 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR52A4P-203ENST00000498233 1014 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 MRPL57P6-201ENST00000506570 309 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC026616.1-201ENST00000523157 525 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR4A40P-201ENST00000533878 948 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 EIF1AXP2-201ENST00000555940 413 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 DPPA3P2-202ENST00000557188 1219 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR4H6P-201ENST00000563771 921 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC024589.2-201ENST00000605642 1294 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC007603.3-201ENST00000636915 979 ntBASIC5.53□□□□□ -1.52
NKX3-1Q99801 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
NKX3-1Q99801 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NKX3-1Q99801 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AP000432.2-201ENST00000624164 2048 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 PPIAP24-201ENST00000328558 471 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms