Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 DHFRP2-201ENST00000414224 547 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 MED28P4-201ENST00000433137 572 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC003989.1-201ENST00000434569 565 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RPL6P30-201ENST00000443382 862 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC084754.1-201ENST00000463466 464 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC093719.1-201ENST00000480427 441 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC083906.1-201ENST00000509298 406 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ZNF519P4-201ENST00000514008 125 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL157899.1-201ENST00000604110 936 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC073046.2-201ENST00000604756 527 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RPSAP75-201ENST00000605848 301 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL357153.4-201ENST00000620487 1016 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 MRPL57P1-201ENST00000621486 265 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL353684.1-201ENST00000622677 1120 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 TET1P1-201ENST00000426627 2301 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC127070.3-201ENST00000503695 3263 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AL596244.1-201ENST00000567068 3779 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SAGE3P-201ENST00000619800 1635 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RNU1-46P-201ENST00000384425 164 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AL139805.1-201ENST00000407837 289 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AL035422.1-201ENST00000414193 397 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SMC4P1-201ENST00000414479 527 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RPS3P2-201ENST00000421346 701 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RPL23AP85-201ENST00000421838 433 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RPSAP65-201ENST00000429660 595 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 EMC3-AS1-205ENST00000438698 534 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 CXCR2P1-202ENST00000443392 1074 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RPL23AP64-201ENST00000469465 435 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RNU6-1334P-201ENST00000516032 105 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 RN7SKP98-201ENST00000517070 156 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 TPRX1P1-201ENST00000557620 319 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC074141.1-201ENST00000588129 2995 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC012653.2-201ENST00000621880 420 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 LYARP1-201ENST00000436977 1501 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AKAP17BP-201ENST00000431706 2719 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 LPAL2-203ENST00000454031 2498 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 AC137056.2-201ENST00000624055 1958 ntBASIC6.48□□□□□ -1.37
HDDC3Q8N4P3 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HDDC3Q8N4P3 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms