Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC217777.1-201ENST00000570034 1471 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 OR2M1P-201ENST00000318104 951 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RPL7P58-201ENST00000402913 758 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP188-201ENST00000410789 317 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 SMARCA2-211ENST00000417599 980 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 NPM1P23-201ENST00000440193 849 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 CYCSP44-201ENST00000448560 313 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP198-201ENST00000459286 306 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 MYL6P4-201ENST00000477911 453 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AP002884.1-201ENST00000479691 655 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC012123.2-201ENST00000485809 248 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RPL7P51-201ENST00000490532 749 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC122713.1-201ENST00000518368 1015 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 GLYATL1P4-201ENST00000529326 906 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC016839.1-201ENST00000578162 867 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC092032.1-201ENST00000603090 165 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AL359704.2-201ENST00000604335 521 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC140479.4-205ENST00000636339 820 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 OLMALINC-203ENST00000641087 3779 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 SELE-203ENST00000367775 3389 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC093278.2-201ENST00000564956 2485 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP206-201ENST00000410823 293 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 RNA5SP155-201ENST00000411154 129 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AL353626.3-201ENST00000413399 657 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC079193.1-201ENST00000460497 588 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 RN7SL561P-201ENST00000488553 281 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 PFN2-213ENST00000494827 793 ntTSL 4 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 OR5M6P-201ENST00000530227 937 ntBASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.53□□□□□ -1.52
PDLIM3Q53GG5 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms