Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC007537.1-201ENST00000539347 327 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AP005212.3-201ENST00000619964 528 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC104837.1-201ENST00000444644 1587 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC091305.2-201ENST00000624049 1576 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC073429.2-201ENST00000569694 1444 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 MTHFD2P5-201ENST00000320415 844 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC136624.1-201ENST00000400791 413 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 PMS2P9-201ENST00000441237 515 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 COX4I1P2-201ENST00000447446 547 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 VN1R38P-201ENST00000450265 887 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC026348.1-201ENST00000462549 1053 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC096743.1-201ENST00000485172 319 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AGGF1P3-201ENST00000493675 1213 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC022826.1-201ENST00000519383 805 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 HNRNPRP2-201ENST00000528421 743 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 OR4A21P-201ENST00000532759 944 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC078878.1-201ENST00000539832 958 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 CYCSP38-201ENST00000559840 322 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC111186.1-201ENST00000604684 130 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC069234.4-201ENST00000621276 412 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 MIR6719-201ENST00000622428 87 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 DDX43P1-201ENST00000510713 1763 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 AC129502.1-201ENST00000623261 1654 ntBASIC6.36□□□□□ -1.39
COL28A1Q2UY09 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL28A1Q2UY09 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 TMSB4XP4-201ENST00000323496 618 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 MIR1178-201ENST00000408396 91 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms