Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC135626.1-201ENST00000556983 435 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 ABI1P1-201ENST00000603375 1120 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 OR4H6P-202ENST00000603819 340 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
COL6A1P12109 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL6A1P12109 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.44□□□□□ -1.22
COL6A1P12109 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 AC027279.4-201ENST00000624371 2072 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 SNORA17A-201ENST00000391185 133 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 SLC20A1P1-201ENST00000413906 956 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC7.43□□□□□ -1.22
COL6A1P12109 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 AC009506.2-201ENST00000420635 840 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 RPS3P2-201ENST00000421346 701 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AC066692.1-201ENST00000421721 457 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 AL691517.1-201ENST00000440833 1235 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL034399.1-201ENST00000451535 380 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 RN7SL104P-201ENST00000498686 293 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AC008945.1-201ENST00000505144 499 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 AC011352.2-201ENST00000514574 1016 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL133399.1-201ENST00000527476 298 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 NPIPB14P-203ENST00000532298 987 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AC068339.2-201ENST00000534395 618 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC7.43□□□□□ -1.22
COL6A1P12109 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 VN1R87P-201ENST00000596706 487 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 AC025811.1-201ENST00000604312 472 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 MIR6768-201ENST00000610734 72 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 Z99129.2-201ENST00000619967 314 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 AL356863.1-201ENST00000623378 1080 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 SNORA17.5-201ENST00000630429 132 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 AC087269.2-201ENST00000641764 975 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 ZNF812P-201ENST00000457674 1694 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC7.43□□□□□ -1.22
COL6A1P12109 AL929601.4-201ENST00000613011 1341 ntBASIC7.43□□□□□ -1.22
COL6A1P12109 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL6A1P12109 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC7.43□□□□□ -1.22
COL6A1P12109 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL6A1P12109 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
COL6A1P12109 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC7.42□□□□□ -1.22
COL6A1P12109 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL6A1P12109 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.42□□□□□ -1.22
COL6A1P12109 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
COL6A1P12109 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms