Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 OR2M1P-201ENST00000318104 951 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 RNU6-883P-201ENST00000384597 107 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 MIR187-201ENST00000385062 109 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 RNA5SP35-201ENST00000391257 129 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 OR1F12-201ENST00000402365 945 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AL117344.1-201ENST00000407196 616 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 GABARAPL3-201ENST00000412799 354 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 OR52N3P-201ENST00000413417 934 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 ETF1P1-206ENST00000427296 984 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC7.97□□□□□ -1.13
HMGB1P09429 AL590128.1-201ENST00000433407 286 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 SEPT14P12-201ENST00000442280 560 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AL158214.1-201ENST00000444423 404 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 MTND2P3-201ENST00000452458 470 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 SULT1D1P-201ENST00000458020 882 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC105391.1-201ENST00000503155 1045 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC011411.1-201ENST00000509592 876 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC114940.1-201ENST00000512162 1265 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 HMGB1P46-201ENST00000520062 610 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 HIGD1AP18-201ENST00000520730 278 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 SNRPCP6-201ENST00000528310 210 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.97□□□□□ -1.13
HMGB1P09429 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 MED31-202ENST00000574128 619 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 MIR378C-201ENST00000578683 81 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC7.97□□□□□ -1.13
HMGB1P09429 AL359704.2-201ENST00000604335 521 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC139493.1-201ENST00000604368 397 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AL118556.2-201ENST00000614375 824 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 AL121985.3-201ENST00000620690 523 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AP003108.4-201ENST00000623917 878 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 AC007012.2-201ENST00000623206 1676 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
HMGB1P09429 SPATA2P1-201ENST00000431223 2055 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 AL034546.1-201ENST00000623740 3693 ntBASIC7.97□□□□□ -1.13
HMGB1P09429 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.97□□□□□ -1.13
HMGB1P09429 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.97□□□□□ -1.13
HMGB1P09429 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HMGB1P09429 AC025809.2-201ENST00000625085 1802 ntBASIC7.96□□□□□ -1.13
HMGB1P09429 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC7.96□□□□□ -1.13
HMGB1P09429 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC7.96□□□□□ -1.13
HMGB1P09429 UGT2B27P-201ENST00000505092 1620 ntBASIC7.96□□□□□ -1.13
HMGB1P09429 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HMGB1P09429 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
HMGB1P09429 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HMGB1P09429 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.96□□□□□ -1.13
HMGB1P09429 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.14
HMGB1P09429 UBBP1-201ENST00000392399 473 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.96□□□□□ -1.14
HMGB1P09429 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 CR848007.2-201ENST00000424918 787 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 HSPE1P16-201ENST00000426640 348 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.96□□□□□ -1.14
HMGB1P09429 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC7.96□□□□□ -1.14
HMGB1P09429 AL157827.1-201ENST00000447622 132 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AL139156.3-201ENST00000454802 394 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 LDHBP2-201ENST00000456969 1005 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC7.96□□□□□ -1.14
HMGB1P09429 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC7.96□□□□□ -1.14
HMGB1P09429 OR10D4P-201ENST00000525892 951 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 AP000662.1-201ENST00000530952 487 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 CASP1-216ENST00000534497 825 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
HMGB1P09429 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC7.96□□□□□ -1.14
HMGB1P09429 SULT1C2P2-201ENST00000562517 294 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC7.96□□□□□ -1.14
HMGB1P09429 RN7SL131P-201ENST00000579043 256 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC015802.5-201ENST00000607478 399 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AC004241.2-201ENST00000614562 444 ntBASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms