Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 AC020978.8-201ENST00000571975 3022 ntBASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC7.88□□□□□ -1.15
SHANK3Q9BYB0 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC092692.1-201ENST00000623625 2595 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 RAB28P1-201ENST00000411517 641 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 RPL12P3-201ENST00000440080 396 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC010343.2-201ENST00000510162 224 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 OR51A1P-201ENST00000511110 946 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 DPY19L2P2-203ENST00000435536 1858 ntBASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
SHANK3Q9BYB0 AC013488.1-201ENST00000526618 1838 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 RNA5SP375-201ENST00000362975 119 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AL445928.1-201ENST00000435545 222 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 CUBNP2-201ENST00000443534 1139 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC004815.1-201ENST00000484185 331 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC093267.1-201ENST00000489176 961 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC008953.1-201ENST00000497334 318 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 GSTP1P1-201ENST00000548078 319 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AL731556.1-201ENST00000394628 3711 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC127024.8-201ENST00000623719 2094 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC016739.1-201ENST00000405359 345 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 RPS3AP15-201ENST00000483874 781 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC114728.1-201ENST00000488289 483 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC093763.2-201ENST00000505334 1223 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 OR51K1P-201ENST00000510214 950 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 RNA5SP400-201ENST00000517155 111 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 MIR4697-201ENST00000582977 78 ntBASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SHANK3Q9BYB0 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SHANK3Q9BYB0 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC7.85□□□□□ -1.15
SHANK3Q9BYB0 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
SHANK3Q9BYB0 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms