Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 LDHC-204ENST00000536880 957 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AC090241.1-201ENST00000587732 621 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 DYNLL1P1-201ENST00000595442 269 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AP001267.4-201ENST00000602598 545 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL049829.3-202ENST00000604278 711 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL352984.2-202ENST00000613699 155 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AP002512.4-202ENST00000641599 4530 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 SNORD1C-201ENST00000363315 78 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 MRPL32P1-201ENST00000406301 247 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC021876.1-201ENST00000425959 359 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 AL731534.1-201ENST00000434711 269 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AL133480.2-201ENST00000456723 487 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 RN7SL350P-201ENST00000492591 299 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 RN7SKP64-201ENST00000517206 328 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 MIR378H-201ENST00000579966 83 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 MIR132-201ENST00000591554 101 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
CCDC42Q96M95 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AP000432.2-201ENST00000624164 2048 ntBASIC6.67□□□□□ -1.34
CCDC42Q96M95 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC42Q96M95 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 SNORA43.1-201ENST00000364863 140 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 RN7SKP205-201ENST00000410999 307 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 NME1P1-201ENST00000420914 382 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 IGLV3-4-201ENST00000432300 244 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC009244.1-201ENST00000450566 258 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 snoU13.29-201ENST00000459370 104 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 MINOS1P4-201ENST00000515470 318 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC092865.1-201ENST00000544395 1023 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 OR4C49P-201ENST00000563891 900 ntBASIC6.66□□□□□ -1.34
CCDC42Q96M95 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 OR7A1P-202ENST00000641542 1158 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms