Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 ACER3-213ENST00000533873 929 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 RN7SL32P-201ENST00000580514 281 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC021422.1-201ENST00000621212 473 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 MIR6813-201ENST00000621638 56 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NKX3-1Q99801 RBPJP6-201ENST00000411556 1431 ntBASIC5.57□□□□□ -1.52
NKX3-1Q99801 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.57□□□□□ -1.52
NKX3-1Q99801 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC119674.1-213ENST00000641177 1386 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 PSMC1P4-201ENST00000515236 1327 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 SNORA70H-201ENST00000383910 135 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 SNORA70J-201ENST00000384182 135 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 CD200R1L-201ENST00000398214 1296 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 H3F3BP1-201ENST00000440551 403 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 GAPDHP33-201ENST00000443168 1013 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 RN7SL790P-201ENST00000474043 298 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 RN7SL37P-201ENST00000490461 307 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 RN7SL350P-201ENST00000492591 299 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AP001960.1-201ENST00000506494 658 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC113398.2-201ENST00000507630 558 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AL390198.2-201ENST00000510553 222 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC139713.1-202ENST00000512366 460 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AP005902.2-201ENST00000518393 307 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 GNG2-203ENST00000553432 577 ntTSL 4 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 ANP32BP1-202ENST00000568553 737 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC024267.2-201ENST00000582737 417 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 U91328.4-201ENST00000608919 517 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC073389.3-201ENST00000609434 935 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AL137246.2-201ENST00000613439 662 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC107905.1-201ENST00000616204 426 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 AC005899.6-201ENST00000620729 297 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.56□□□□□ -1.52
NKX3-1Q99801 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
NKX3-1Q99801 SAGE3P-201ENST00000619800 1635 ntBASIC5.56□□□□□ -1.52
NKX3-1Q99801 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL591135.1-201ENST00000401578 5914 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC027575.3-201ENST00000583058 2747 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AP004289.1-201ENST00000436307 2205 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 OR7A2P-201ENST00000304105 930 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL079341.1-201ENST00000404701 1207 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC117434.1-201ENST00000419971 836 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NKX3-1Q99801 RPEP4-201ENST00000437636 602 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.55□□□□□ -1.52
NKX3-1Q99801 AL356121.1-201ENST00000442911 156 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 SNRPBP1-201ENST00000443634 282 ntBASIC5.55□□□□□ -1.52
NKX3-1Q99801 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms