Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL157884.1-201ENST00000424561 454 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 VN1R38P-201ENST00000450265 887 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 CCNJP2-201ENST00000457810 1163 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 RN7SL643P-201ENST00000471845 291 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC098818.1-201ENST00000478593 252 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC117500.1-201ENST00000497352 755 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC092349.1-201ENST00000504903 310 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC106800.3-201ENST00000511389 308 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 RNA5SP418-201ENST00000515951 117 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 COX6B1P4-201ENST00000519826 484 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 NATP-201ENST00000523491 878 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 CYCSP25-201ENST00000525280 316 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC008055.1-201ENST00000547032 609 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 TPRX1P1-201ENST00000557620 319 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC138207.8-204ENST00000579588 527 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC012368.3-201ENST00000604190 219 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL138960.1-201ENST00000613838 513 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL589935.2-201ENST00000616471 1231 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AP003789.1-201ENST00000617737 605 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC048341.3-201ENST00000619323 491 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 TMCC1P1-201ENST00000518897 1980 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC105235.1-201ENST00000623208 1816 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
VPS35Q96QK1 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC022905.1-201ENST00000503430 3048 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 AC083837.1-201ENST00000565297 2994 ntBASIC6.36□□□□□ -1.39
VPS35Q96QK1 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AL391261.1-201ENST00000555712 1479 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 RPL23AP18-201ENST00000416139 468 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 RPL7AP51-201ENST00000422016 760 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 AK3P5-201ENST00000432033 519 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 EMC3-AS1-205ENST00000438698 534 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 OR2L9P-201ENST00000444456 913 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC007383.1-201ENST00000445875 636 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 COX4I1P2-201ENST00000447446 547 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC044810.1-201ENST00000480271 711 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 RN7SL568P-201ENST00000493069 298 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC116917.1-201ENST00000520558 305 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 IGHV4-55-201ENST00000520889 368 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC011500.1-201ENST00000601963 469 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 AC012676.3-201ENST00000614983 479 ntBASIC6.35□□□□□ -1.39
VPS35Q96QK1 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
VPS35Q96QK1 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AL136984.1-201ENST00000607611 1893 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 182.4 ms