Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 AC025809.2-201ENST00000625085 1802 ntBASIC6.36□□□□□ -1.39
VMP1Q96GC9 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VMP1Q96GC9 AL731556.1-201ENST00000394628 3711 ntBASIC6.36□□□□□ -1.39
VMP1Q96GC9 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.36□□□□□ -1.39
VMP1Q96GC9 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 SYT14P1-202ENST00000600441 1448 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 NEK2P4-201ENST00000425793 1329 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AL512310.3-201ENST00000547023 1335 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 STAG3L4-201ENST00000352103 530 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AL672167.2-201ENST00000377164 879 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 BX119904.3-201ENST00000428194 957 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 RPS10P21-201ENST00000430654 475 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 PPIAP32-201ENST00000449940 472 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC022080.2-201ENST00000452932 533 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 NPM1P9-201ENST00000453156 844 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC063955.1-201ENST00000462872 685 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC093815.1-201ENST00000508637 280 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 MTCO3P42-201ENST00000509488 518 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 MTCO3P39-201ENST00000514812 518 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC010442.1-201ENST00000515583 816 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC113191.1-201ENST00000517759 403 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 HNRNPRP2-201ENST00000528421 743 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CHEK2P2-201ENST00000554701 672 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AL035410.2-201ENST00000604963 864 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 AL451049.1-201ENST00000608672 497 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 NF1P10-201ENST00000613227 742 ntBASIC6.35□□□□□ -1.39
VMP1Q96GC9 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
VMP1Q96GC9 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VMP1Q96GC9 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
VMP1Q96GC9 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 AL136531.3-201ENST00000624378 3658 ntBASIC6.34□□□□□ -1.39
VMP1Q96GC9 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
VMP1Q96GC9 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VMP1Q96GC9 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VMP1Q96GC9 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 Y_RNA.62-201ENST00000362840 99 ntBASIC6.34□□□□□ -1.39
VMP1Q96GC9 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.34□□□□□ -1.39
VMP1Q96GC9 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.34□□□□□ -1.39
VMP1Q96GC9 AL391419.1-201ENST00000398901 1275 ntBASIC6.34□□□□□ -1.39
VMP1Q96GC9 CYCSP17-201ENST00000407870 315 ntBASIC6.34□□□□□ -1.39
VMP1Q96GC9 RN7SKP205-201ENST00000410999 307 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms