Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 CRYGGP-201ENST00000443337 145 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RPL23AP8-201ENST00000479812 475 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC124945.1-201ENST00000485133 188 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC015524.1-201ENST00000491585 472 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 OR2A3P-201ENST00000493774 953 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL135933.1-201ENST00000498657 802 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC108043.1-201ENST00000512696 574 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SCARNA6-201ENST00000515982 265 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RNA5SP116-201ENST00000516132 98 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC079866.1-201ENST00000534985 1220 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC078878.1-201ENST00000539832 958 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL031846.1-201ENST00000560933 314 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 OR4C49P-201ENST00000563891 900 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RN7SL199P-201ENST00000578752 281 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RN7SL656P-201ENST00000579044 281 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 RN7SL404P-201ENST00000582421 281 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC016542.3-201ENST00000623520 619 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC211433.3-201ENST00000623770 375 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AC026108.1-201ENST00000635444 547 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 AL356361.1-201ENST00000400943 1459 ntBASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MAPK10-379ENST00000642013 1385 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MFSD8-256ENST00000641949 1640 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC013488.1-201ENST00000526618 1838 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC025809.2-201ENST00000625085 1802 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP47-201ENST00000365347 328 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 SNORA64.3-201ENST00000365647 134 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 NPM1P10-201ENST00000398310 865 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP229-201ENST00000410465 302 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PSMD10P2-201ENST00000432890 672 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AL161626.1-201ENST00000441480 490 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC104849.1-201ENST00000462623 405 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 RN7SL83P-201ENST00000468131 297 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC094085.1-201ENST00000468914 584 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC009879.1-201ENST00000520029 839 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC087752.2-201ENST00000521219 281 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 RN7SL230P-201ENST00000580835 303 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms