Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RN7SL326P-201ENST00000477493 296 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 SNX18P24-201ENST00000505249 671 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.98□□□□□ -1.45
FOXA1P55317 OR4D12P-201ENST00000509361 911 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.98□□□□□ -1.45
FOXA1P55317 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.98□□□□□ -1.45
FOXA1P55317 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.98□□□□□ -1.45
FOXA1P55317 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.98□□□□□ -1.45
FOXA1P55317 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 AC027796.1-201ENST00000575593 512 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 MIR4732-201ENST00000581873 76 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AC024267.2-201ENST00000582737 417 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 AL589765.6-201ENST00000601909 549 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AC139792.1-201ENST00000607051 647 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 MIR6503-201ENST00000622884 86 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AC068213.1-201ENST00000625124 226 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.97□□□□□ -1.45
FOXA1P55317 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 AL359091.1-201ENST00000449048 1734 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.97□□□□□ -1.45
FOXA1P55317 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
FOXA1P55317 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.97□□□□□ -1.45
FOXA1P55317 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 OR6R1P-201ENST00000431838 940 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AL731534.1-201ENST00000434711 269 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC128677.1-201ENST00000436016 442 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 SOCS5P1-201ENST00000440415 949 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 RN7SL39P-201ENST00000462264 297 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 MTCO1P55-201ENST00000489829 745 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC015524.1-201ENST00000491585 472 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC139713.1-202ENST00000512366 460 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 CYP4F27P-201ENST00000514557 494 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.97□□□□□ -1.45
FOXA1P55317 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC135983.3-201ENST00000528049 1226 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.97□□□□□ -1.45
FOXA1P55317 AC026898.1-201ENST00000586404 571 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.97□□□□□ -1.45
FOXA1P55317 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.97□□□□□ -1.45
FOXA1P55317 AL390877.1-201ENST00000605704 214 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 AC069234.4-201ENST00000621276 412 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 SNX18P3-202ENST00000565670 1750 ntBASIC5.97□□□□□ -1.45
FOXA1P55317 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
FOXA1P55317 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
FOXA1P55317 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.97□□□□□ -1.45
FOXA1P55317 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
FOXA1P55317 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
FOXA1P55317 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
FOXA1P55317 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
FOXA1P55317 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.45
FOXA1P55317 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
FOXA1P55317 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.96□□□□□ -1.46
FOXA1P55317 AL022323.4-201ENST00000623980 13120 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 AL359955.1-201ENST00000455242 3275 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
FOXA1P55317 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 RNA5SP346-201ENST00000363541 121 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 VIM2P-201ENST00000402383 1294 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 GGA1-205ENST00000405147 575 ntTSL 4 BASIC5.96□□□□□ -1.46
FOXA1P55317 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 PPIAP10-201ENST00000438675 458 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 EMC3-AS1-205ENST00000438698 534 ntBASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms