Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.79□□□□□ -1.48
SOX2P48431 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SOX2P48431 OR4K17-201ENST00000315543 1032 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC023886.2-201ENST00000321285 411 ntBASIC5.79□□□□□ -1.48
SOX2P48431 RNA5SP442-201ENST00000365050 107 ntBASIC5.79□□□□□ -1.48
SOX2P48431 RNU6-650P-201ENST00000365658 111 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AP003170.5-201ENST00000397185 335 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 RPS7P12-201ENST00000422385 582 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC007568.1-201ENST00000422912 471 ntBASIC5.79□□□□□ -1.48
SOX2P48431 SNRPEP5-201ENST00000425442 278 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX2P48431 BMP6P1-201ENST00000431230 679 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX2P48431 AL590128.1-201ENST00000433407 286 ntBASIC5.79□□□□□ -1.48
SOX2P48431 PRKAR1AP1-201ENST00000441422 1162 ntBASIC5.79□□□□□ -1.48
SOX2P48431 BX005266.3-201ENST00000443013 1075 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC006326.1-201ENST00000445465 787 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AL096803.1-201ENST00000456921 1021 ntBASIC5.79□□□□□ -1.48
SOX2P48431 RPS26P11-201ENST00000463445 348 ntBASIC5.79□□□□□ -1.48
SOX2P48431 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 RPS26P6-201ENST00000475156 348 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC018475.1-201ENST00000478358 465 ntBASIC5.79□□□□□ -1.48
SOX2P48431 RN7SL445P-201ENST00000495609 293 ntBASIC5.79□□□□□ -1.48
SOX2P48431 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 DCAF13P2-201ENST00000514188 555 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.79□□□□□ -1.48
SOX2P48431 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.79□□□□□ -1.48
SOX2P48431 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 MIR1273F-201ENST00000580581 99 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX2P48431 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX2P48431 COX6CP16-201ENST00000603667 216 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AC092960.1-201ENST00000604762 351 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.79□□□□□ -1.48
SOX2P48431 AP000770.2-201ENST00000623694 100 ntBASIC5.79□□□□□ -1.48
SOX2P48431 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SOX2P48431 AC007683.2-201ENST00000624681 714 ntBASIC5.79□□□□□ -1.48
SOX2P48431 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SOX2P48431 AL356118.1-201ENST00000635272 1078 ntBASIC5.79□□□□□ -1.48
SOX2P48431 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SOX2P48431 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SOX2P48431 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
SOX2P48431 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 TMCC1P1-201ENST00000518897 1980 ntBASIC5.78□□□□□ -1.48
SOX2P48431 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX2P48431 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
SOX2P48431 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
SOX2P48431 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 OR10D1P-201ENST00000355343 936 ntBASIC5.78□□□□□ -1.48
SOX2P48431 RNA5SP114-201ENST00000363780 113 ntBASIC5.78□□□□□ -1.48
SOX2P48431 SNORA70H-201ENST00000383910 135 ntBASIC5.78□□□□□ -1.48
SOX2P48431 SNORA70J-201ENST00000384182 135 ntBASIC5.78□□□□□ -1.48
SOX2P48431 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX2P48431 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX2P48431 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.78□□□□□ -1.48
SOX2P48431 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX2P48431 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX2P48431 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX2P48431 MTND4LP17-201ENST00000414607 293 ntBASIC5.78□□□□□ -1.48
SOX2P48431 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX2P48431 AC097721.1-201ENST00000427150 1253 ntBASIC5.78□□□□□ -1.48
SOX2P48431 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX2P48431 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX2P48431 MTCO1P45-201ENST00000431457 267 ntBASIC5.78□□□□□ -1.48
SOX2P48431 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms