Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC087888.1-201ENST00000550884 1254 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC010547.7-201ENST00000570323 333 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC005899.7-201ENST00000618199 588 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 AC073488.6-201ENST00000632293 754 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 BX284613.1-201ENST00000452221 1641 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC009237.3-203ENST00000442128 3551 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL6A1P12109 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL6A1P12109 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC7.46□□□□□ -1.21
COL6A1P12109 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.46□□□□□ -1.21
COL6A1P12109 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL6A1P12109 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL6A1P12109 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL6A1P12109 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
COL6A1P12109 NRIR-201ENST00000366140 799 ntTSL 3 BASIC7.46□□□□□ -1.22
COL6A1P12109 TINAG-202ENST00000370864 692 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 LYPLA1P3-201ENST00000402650 695 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 UQCRFS1P3-201ENST00000407697 385 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC7.46□□□□□ -1.22
COL6A1P12109 GTF2IP5-201ENST00000414608 731 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 OR13Z1P-201ENST00000416141 834 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 SETP8-201ENST00000435341 628 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC073109.1-201ENST00000445066 978 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 RN7SL177P-201ENST00000476596 299 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 DEFB109A-201ENST00000482450 265 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 RBBP4P1-201ENST00000502424 1276 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 LSM3P4-201ENST00000502948 309 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC113398.2-201ENST00000507630 558 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 CCNHP1-201ENST00000513311 678 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.46□□□□□ -1.22
COL6A1P12109 SNORA70.17-201ENST00000516449 133 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 CIR1P1-201ENST00000524055 1133 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 EIF4A2P3-201ENST00000525903 1055 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC134349.2-201ENST00000535136 910 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC7.46□□□□□ -1.22
COL6A1P12109 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 AC005412.1-201ENST00000580812 1049 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC008521.2-201ENST00000591021 259 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 AC004805.3-201ENST00000603178 310 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 AC103703.1-201ENST00000634783 663 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 CU459211.1-201ENST00000635667 749 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 SEPT7P7-201ENST00000420492 1301 ntBASIC7.46□□□□□ -1.22
COL6A1P12109 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC7.46□□□□□ -1.22
COL6A1P12109 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL6A1P12109 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC7.46□□□□□ -1.22
COL6A1P12109 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC7.45□□□□□ -1.22
COL6A1P12109 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 AC020658.2-201ENST00000559030 4020 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC005702.3-201ENST00000585345 1447 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
COL6A1P12109 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 RNU6-819P-201ENST00000364116 107 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 SNORA70.3-201ENST00000365075 132 ntBASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms