Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC4.79□□□□□ -1.64
CXCL1P09341 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 SNRPBP1-201ENST00000443634 282 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 AC131392.1-201ENST00000506490 633 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 snoU109.5-201ENST00000516231 132 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL1P09341 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC4.79□□□□□ -1.64
CXCL1P09341 PVT1-214ENST00000522875 922 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 AC021820.1-201ENST00000525564 808 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC4.79□□□□□ -1.64
CXCL1P09341 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC4.79□□□□□ -1.64
CXCL1P09341 AP002383.5-201ENST00000542623 1161 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 ANP32BP1-202ENST00000568553 737 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC4.79□□□□□ -1.64
CXCL1P09341 AL589765.5-201ENST00000596133 515 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 ACTG1P22-201ENST00000603793 1099 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL1P09341 TEX41-255ENST00000626404 610 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL1P09341 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
CXCL1P09341 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 AC023245.2-201ENST00000530760 2978 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 AL161756.3-201ENST00000641216 2071 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 AL442128.2-201ENST00000620246 1824 ntBASIC4.79□□□□□ -1.64
CXCL1P09341 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL1P09341 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL1P09341 TRIM53CP-201ENST00000531490 1354 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC4.78□□□□□ -1.64
CXCL1P09341 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.78□□□□□ -1.64
CXCL1P09341 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 SNORA30B-201ENST00000365319 129 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 LDHAP5-201ENST00000394996 622 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 METTL15P3-201ENST00000415522 1221 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 AL121878.1-201ENST00000418638 859 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC023141.1-201ENST00000419418 379 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CXCL1P09341 PFN1P11-201ENST00000445829 389 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 MED28P7-201ENST00000456611 530 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 RARRES2P3-201ENST00000457739 473 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 NDUFB4P1-201ENST00000462398 381 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 RN7SL263P-201ENST00000467969 290 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC106800.3-201ENST00000511389 308 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 NPM1P21-201ENST00000513394 762 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 REG4-204ENST00000530654 612 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AL049779.3-201ENST00000557141 606 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL1P09341 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC006363.1-201ENST00000603806 463 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL1P09341 AC093635.1-201ENST00000609028 555 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 MIR7854-201ENST00000620068 65 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 AC243725.1-201ENST00000637164 436 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 AC010401.2-201ENST00000575137 4934 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL1P09341 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL1P09341 HDAC1P2-201ENST00000453661 1398 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 AP001541.1-201ENST00000623322 1904 ntBASIC4.78□□□□□ -1.64
CXCL1P09341 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CXCL1P09341 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CXCL1P09341 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CXCL1P09341 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
CXCL1P09341 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CXCL1P09341 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms