Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 OR3D1P-201ENST00000438288 955 ntBASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 ATG10-208ENST00000513634 618 ntTSL 2 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 SNORD95-201ENST00000579879 68 ntBASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 MIR1273E-201ENST00000581165 102 ntBASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 AC073333.2-201ENST00000603589 769 ntBASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 AC211433.2-201ENST00000608433 387 ntBASIC12.02□□□□□ -0.49
SHROOM4Q9ULL8 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AL359976.1-201ENST00000418655 3528 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 MIR1203-201ENST00000408812 85 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC098847.1-201ENST00000473094 348 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 RNA5SP434-201ENST00000516647 121 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AL121579.2-201ENST00000555466 590 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC022106.1-201ENST00000612834 766 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC245014.3-201ENST00000618589 347 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 SPATA31C1-201ENST00000420021 3895 ntBASIC12.01□□□□□ -0.49
SHROOM4Q9ULL8 AC062029.1-202ENST00000606164 3651 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 OR3A2-201ENST00000408891 1076 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC096537.2-201ENST00000413707 714 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC093155.2-201ENST00000420734 937 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AL512605.1-202ENST00000441919 381 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AL359955.2-201ENST00000445380 353 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC117395.1-201ENST00000487390 403 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 AL359704.2-201ENST00000604335 521 ntBASIC12□□□□□ -0.49
SHROOM4Q9ULL8 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
SHROOM4Q9ULL8 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 OR2M1P-201ENST00000318104 951 ntBASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 NPM1P22-201ENST00000427761 952 ntBASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 RNA5SP438-201ENST00000516561 112 ntBASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC005332.4-201ENST00000592752 579 ntBASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SHROOM4Q9ULL8 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 RN7SL193P-201ENST00000491708 276 ntBASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 AC114781.3-201ENST00000512083 142 ntBASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 COX6CP7-201ENST00000597056 208 ntBASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 RBPJP7-201ENST00000442803 1447 ntBASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 RBPJP5-201ENST00000449433 1447 ntBASIC11.98□□□□□ -0.49
SHROOM4Q9ULL8 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms